PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g027260.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 651aa MW: 71975.5 Da PI: 6.3308

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g027260.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.7e-30	281	340	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Sopen06g027260.1 281 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCAEDMSILITTYEGTHNHT 340 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-31	266	342	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	274	342	IPR003657	WRKY domain
PROSITE profile	PS50811	28.001	276	342	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	281	341	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	282	339	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MENKNKAEYY SPDDEDRDID DQENIVHQFG KGRKEREDDI SKPSSPHHKD YMNIDNIEEG 60 AVNVMVKRER SPPEHNSMAS SSTHKEQDDQ LASAKDEMRE VMEENQRLRM HLDRMMKEYR 120 NLQNQFHDIV QKETDQKSSS TTVNTSTTHH DHESDQEADQ LVSLSLGRTT SDMKKDDLSK 180 ILKKDKVHDD EGVIIISNNN KSLDLGLDCK FETTPTECSP VNYSPENSLD DIQANKDENE 240 ETSNKNLKTM RNNGDGDDVS QQNPTKRARV SVRVRCDAPT MNDGCQWRKY GQKIAKGNPC 300 PRAYYRCTVA PNCPVRKQVQ RCAEDMSILI TTYEGTHNHT LPLSATAMAS TTSAAASMLL 360 SGSSNSSDPN PQVTATTTTT PTTTTSANIN GLNFYLSDTS KHHKSPYYFP NSSISASAPN 420 SLPTITLDLT STSSSSPSSL SHLNRMTQNF PPRYNYNNNN STTNLNFSSV LESNSLPISW 480 TNNYPNQTYN KNNQNFGPLT FSSRSSQDNI FQSYLQKNTT QSSLPPDTIA AATKAITSDP 540 NFHSALAAAL TSIIGNSPIE NKSVHNLNVT QPFPILSSLP SSSNPNKCSS SLLNKPTSSA 600 SANNNNNNNN SNSTQQPGNN SMVFFGQSSS SLPFSTSNKG KSTSPSDSKF D

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MENKNKAEYY SPDDEDRDID DQENIVHQFG KGRKEREDDI SKPSSPHHKD YMNIDNIEEG  60
AVNVMVKRER SPPEHNSMAS SSTHKEQDDQ LASAKDEMRE VMEENQRLRM HLDRMMKEYR  120
NLQNQFHDIV QKETDQKSSS TTVNTSTTHH DHESDQEADQ LVSLSLGRTT SDMKKDDLSK  180
ILKKDKVHDD EGVIIISNNN KSLDLGLDCK FETTPTECSP VNYSPENSLD DIQANKDENE  240
ETSNKNLKTM RNNGDGDDVS QQNPTKRARV SVRVRCDAPT MNDGCQWRKY GQKIAKGNPC  300
PRAYYRCTVA PNCPVRKQVQ RCAEDMSILI TTYEGTHNHT LPLSATAMAS TTSAAASMLL  360
SGSSNSSDPN PQVTATTTTT PTTTTSANIN GLNFYLSDTS KHHKSPYYFP NSSISASAPN  420
SLPTITLDLT STSSSSPSSL SHLNRMTQNF PPRYNYNNNN STTNLNFSSV LESNSLPISW  480
TNNYPNQTYN KNNQNFGPLT FSSRSSQDNI FQSYLQKNTT QSSLPPDTIA AATKAITSDP  540
NFHSALAAAL TSIIGNSPIE NKSVHNLNVT QPFPILSSLP SSSNPNKCSS SLLNKPTSSA  600
SANNNNNNNN SNSTQQPGNN SMVFFGQSSS SLPFSTSNKG KSTSPSDSKF D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-20	268	342	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	0.0	GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078734.2	0.0	probable WRKY transcription factor 61
Swissprot	D8VNC6	0.0	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1U8H0S0	0.0	A0A1U8H0S0_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZCE2	0.0	A0A2G2ZCE2_CAPAN; probable WRKY transcription factor 61
STRING	Solyc06g070990.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	4e-55	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]