PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g027120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 41868.2 Da PI: 6.3175 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+ I+ g+ R+ k+c++rw +yl Sopen06g027120.1 14 KGPWTPEEDIILVSYIQEHGPGNWRNIPTNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Sopen06g027120.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.526 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.93E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.609 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-10 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRPPCCEKS GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNNNK 120 KVEGHDDRQE GTSASSSSSQ SKIIKGQWER RLQTDIHTAK QALCDALSLD TTPNNKNNNN 180 NPPPHDQDQQ PPSVQTPTTY ASSAENIAKL LQNWMKNSPK STSSSSSKIT YMSSLNNNLS 240 IGAVSSSSPS EGTVNVTPGQ GLDSIFSFNS SNNSDVSQSV SVDEGGNFST PENHNNNNNN 300 NAGIYQVESK PNLPDFKPEN GNFQEESKQN METQQVPLTM LEKWLLEDAN AQAEQEDQLM 360 GIGMGMGMTL AETNDLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077742.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-119 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A3Q7H0Q5 | 0.0 | A0A3Q7H0Q5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g069850.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-93 | myb domain protein 30 |
Publications ? help Back to Top | |||
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