PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g026850.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 546aa    MW: 60788.6 Da    PI: 4.3457
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g026850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07273320347
                       SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W++eE+el+ ++v    + lG++ W+  a +++  R+  +++s+++++
  Sopen06g026850.1 273 KWSEEEEELFHEVVfsnpAALGKNFWDHLAVEFP-SRSKRDLVSYYFNV 320
                       8*************4444456666**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-4269332IPR009057Homeodomain-like
SMARTSM007173.2E-4270323IPR001005SANT/Myb domain
CDDcd001670.0055273321No hitNo description
PROSITE profilePS500906.051273321IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MVQKRPYSEE KLYEVSSKQP RHVEPSSQLV SFLQFPCESV APNSYTSGGD EEKFSEVKAF  60
SEKRPDSCDA TAVPVSSEKA IETSIHGSAS NSSWTSSSTS EEDIRSEVPF HVLTASKYYS  120
SDPPFRVVIH PMEVYSPLFN NPPRKSVPIG PDFQAELPEW GAYDSKNISV KEGTQESSNL  180
PSQALESDFV DHHDEENKLA GTCIIPMPKL ESPADHEENV GAGRIGCSCE DAGSFGCVRL  240
HIMEAREKLK AALGEETFVR LGVYDMGEIV AEKWSEEEEE LFHEVVFSNP AALGKNFWDH  300
LAVEFPSRSK RDLVSYYFNV FILRKRAKQN RFDPSNIDSD NDEWQEIDDD VVATGAQMTD  360
DDEDSVVESP IYQNYPGHNE IYVTEKQAYD EEAGVATLED YQTTNFCRRK VLSDVSKACP  420
DELIDNNSSC GHNIQPLDRH HSNEVGNHDV EVNSCTTDAA GASSDTPQVK TDDCKHWASH  480
FAGVGIDSGH DFVMEPSNGK EWDMGGYLSC AKNEVDLLPT CSMIEEVFGD EAWSSKLRDG  540
HSLSKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328LRKRAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079835.10.0uncharacterized protein LOC107023606
RefseqXP_027773620.10.0uncharacterized protein LOC107023606
TrEMBLM1D6M80.0M1D6M8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625