PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g026500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 362aa MW: 40708.2 Da PI: 7.8793 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.1 | 3.1e-38 | 114 | 276 | 3 | 134 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................sss 68 kkdrhski T++g+RdRR+Rls++ a++fF Lqd LGfdk+skt+eWLl+q+ ai el+ s+s Sopen06g026500.1 114 SKKDRHSKINTARGPRDRRMRLSLDAARKFFRLQDLLGFDKASKTVEWLLTQSDSAIEELVAAkgndaqvaqqtscntpttttgigaicaSNS 206 69*************************************************************99*****99999999999999988877444 PP TCP 69 sasec...eaesssssasnsssg.kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 +++c + ++ ss+++++++ + +k++ k+ + ++ a l kesr++arararert++k++ ++ Sopen06g026500.1 207 ISESCeviSGTDETSSNDKNKETaQDEKKKRKKVVNAARRAVLEPLTKESRNQARARARERTKSKKMSQT 276 445677774444444444444442555555588888888999999***************9999887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.6E-44 | 114 | 274 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.063 | 115 | 173 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.49 | 254 | 271 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MYPPSNNNCN YSPILSSLIC QNIPSSPCMQ YEHELYFQSF NHDDQYYFQQ QQLVPLIDDL 60 SPHILADSCI ETITKPSNCN HVLEGMEEGR GEKKGDDDVR SSRISISKNN KRSSKKDRHS 120 KINTARGPRD RRMRLSLDAA RKFFRLQDLL GFDKASKTVE WLLTQSDSAI EELVAAKGND 180 AQVAQQTSCN TPTTTTGIGA ICASNSISES CEVISGTDET SSNDKNKETA QDEKKKRKKV 240 VNAARRAVLE PLTKESRNQA RARARERTKS KKMSQTGKSK APANDLNPSG SRRPANKTCE 300 EAGTHEELNF HQEKNSVDDC NFMVNGNWNP FTIFSYHEQY AGISNEHQLV TDLQFCGKLW 360 EG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 238 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078058.1 | 0.0 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | F6KB99 | 0.0 | F6KB99_SOLLC; BRANCHED1B | ||||
STRING | Solyc06g069240.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-19 | TCP family protein |