PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g025840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34847.6 Da PI: 3.9639 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.6 | 2.7e-11 | 12 | 57 | 2 | 48 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 ppGfrF Ptdee++++yL + v+g+ + +i+ vd+y+++P Lp Sopen06g025840.1 12 PPGFRFIPTDEEILQYYLFRYVTGNYILP-GIIPLVDLYECDPDYLP 57 9*************************777.79*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-15 | 7 | 98 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.108 | 11 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-4 | 12 | 36 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSGEEAWKQQ IPPGFRFIPT DEEILQYYLF RYVTGNYILP GIIPLVDLYE CDPDYLPEGD 60 DIPAQWIMHE YVISCKIVKP SIEDEYYEDI AACRIYKKKP EIKEKTLIDP NIDHNNEEPQ 120 LSVKRKFIAS DPPHDTTMTS NYLCDSQAAL MLDGMRTTYE IGQTSNTKSI PIEISHTSST 180 NLTPFEIDQM SYTKSTLFEI GQTSNTNSTP LEIGQTSNTN STTLEIDQIS NNNSTPLQDN 240 IVPMGEGVFV GPTDQTSTNV YQNQSNEGKI EGTNFDLDLD LDELHNVLHD SSPPDESFEE 300 YWQSLQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027773316.1 | 1e-150 | NAC domain-containing protein 2-like | ||||
TrEMBL | K4C832 | 1e-139 | K4C832_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g068580.1.1 | 1e-140 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16162 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 3e-13 | NAC domain containing protein 20 |