PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g025710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 359aa    MW: 39654.3 Da    PI: 8.2726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g025710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30167226159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ +++++pr+Y+rC++a gCpvkkkv+rs ed+++v+ tYegeHnh+
  Sopen06g025710.1 167 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApGCPVKKKVQRSIEDQSIVVATYEGEHNHP 226
                       58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29159227IPR003657WRKY domain
PROSITE profilePS5081126.418162228IPR003657WRKY domain
SuperFamilySSF1182906.28E-26164227IPR003657WRKY domain
SMARTSM007745.5E-36167227IPR003657WRKY domain
PfamPF031064.9E-25168226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPRQK VLKQEVQSDF TGLSIERENM VVKNEAGDLL EELNRVSSEN  60
KKLTEMLTVV CENYNALRNQ MMEYMSTQNG VAEDTSAGSR KRKAESISNP VNNNNNNNNM  120
DVVHGRSSES SSSDEESCCK KLREEHIKAK VTIVSMKTDA SDTSLIVKDG YQWRKYGQKV  180
TRDNPCPRAY FRCSFAPGCP VKKKVQRSIE DQSIVVATYE GEHNHPQTSK PESGPSTNTS  240
TASRLNVTTL AGTTTSVPCS TTLNSSGPTI TLDLTAPKTL EKRDMKMNHT TTSPTSGNSI  300
RTTTTTPAGG GEYQNRPEFQ QFLIEQMATS LTKDPSFKAA LAAAISGKIL QHNNQTGRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-201662251371WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6542650.0FJ654265.1 Solanum lycopersicum WRKY transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079997.10.0probable WRKY transcription factor 60
TrEMBLA0A3Q7H0070.0A0A3Q7H007_SOLLC; Uncharacterized protein
STRINGSolyc06g068460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-87WRKY DNA-binding protein 40