PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g025480.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 742aa MW: 85046 Da PI: 5.3239

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g025480.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.1e-22	134	217	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + Sopen06g025480.1 134 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMVRLRLVESNRWRVDEVKLEHNHLF 217 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	134	217	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-25	337	423	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.545	623	659	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-5	631	657	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.7E-6	634	661	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MEEGMGTSEQ LPVDEGSDNE AASEEVFDIT CNGIESDGDQ VLNIEANELG TTAGQILEFE 60 SHEAEKNCEH VLNFESGVPR DNSHRLSEFH SNGLEDPRCG DTAINDGHTG SSLGKSYPPP 120 VVGMEFESYE DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAN 180 SRRKETRTGC LAMVRLRLVE SNRWRVDEVK LEHNHLFDPE RVQNSKSHKK MDAGVKRKLE 240 PAVDVEVRTI KLYRTPAVET SGEGSSDERA VSSQIDGSTH LKLKEGDSQV IYNFFCRVQL 300 TKPNFFYIMD FNDEGYLKNV FWIDSRSRAA YAYFGDVVVV DTTCLSKKYD IPLLAFFGLN 360 HHTETLLLGC SLLADESFET YVWLLRAWLS CMSGRPPQTI ITDHCKALQN AISEVFPRAN 420 HRLNLSIILD SIVNSVGEVG ESEVFHEVLY NTVYSSLKID EFEVAWEEMA QRFGCRGYGW 480 FQSLYEDRER WAPIYMKDTF LAGISIDQNG EFMCPFFDGF VHKQTNLREF FDIYDFVLQK 540 NHQKEVVCDL DSKEFSPVLR TRCNYELQLS KLYTKEIFLK FQEEMVLMSN CSGIAQIHTN 600 GPIITFMVKE RGVQGDMSDA RDVEVTYDKI GVEVRCMCSC FNFKGYLCRH ALSVLNYNGI 660 EEIPNHYILT RWRKDFKRLY APELGSSNID ISNPVQLFDH LHRRAMQVVD EGMVSQRHFM 720 VAWQAFKESL NKVRLAADKR VS

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MEEGMGTSEQ LPVDEGSDNE AASEEVFDIT CNGIESDGDQ VLNIEANELG TTAGQILEFE  60
SHEAEKNCEH VLNFESGVPR DNSHRLSEFH SNGLEDPRCG DTAINDGHTG SSLGKSYPPP  120
VVGMEFESYE DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAN  180
SRRKETRTGC LAMVRLRLVE SNRWRVDEVK LEHNHLFDPE RVQNSKSHKK MDAGVKRKLE  240
PAVDVEVRTI KLYRTPAVET SGEGSSDERA VSSQIDGSTH LKLKEGDSQV IYNFFCRVQL  300
TKPNFFYIMD FNDEGYLKNV FWIDSRSRAA YAYFGDVVVV DTTCLSKKYD IPLLAFFGLN  360
HHTETLLLGC SLLADESFET YVWLLRAWLS CMSGRPPQTI ITDHCKALQN AISEVFPRAN  420
HRLNLSIILD SIVNSVGEVG ESEVFHEVLY NTVYSSLKID EFEVAWEEMA QRFGCRGYGW  480
FQSLYEDRER WAPIYMKDTF LAGISIDQNG EFMCPFFDGF VHKQTNLREF FDIYDFVLQK  540
NHQKEVVCDL DSKEFSPVLR TRCNYELQLS KLYTKEIFLK FQEEMVLMSN CSGIAQIHTN  600
GPIITFMVKE RGVQGDMSDA RDVEVTYDKI GVEVRCMCSC FNFKGYLCRH ALSVLNYNGI  660
EEIPNHYILT RWRKDFKRLY APELGSSNID ISNPVQLFDH LHRRAMQVVD EGMVSQRHFM  720
VAWQAFKESL NKVRLAADKR VS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015077272.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A3Q7GZW0	0.0	A0A3Q7GZW0_SOLLC; Uncharacterized protein
STRING	Solyc06g068210.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]