PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g023690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 322aa MW: 34474 Da PI: 7.9123 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.6 | 1.2e-39 | 33 | 161 | 5 | 89 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ Sopen06g023690.1 33 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplf 125 899***************************************************************999877777777774444455556677 PP TCP 89 ...................................k 89 + Sopen06g023690.1 126 ihggattmlgfhhqipgnsfgqdpdenfmkkryreD 161 777777766666666666665433333332222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-38 | 36 | 178 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.652 | 36 | 90 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEFRESNSKN NQDGGSNSNN NSNENNNNVK IVKKPSKDRH TKVDGRGRRI RMPALCAARV 60 FQLTKELGHK SDGETIEWLL QQAEPSIIAA TGTGTIPANF STLNVSLRSS GTTISAPPSK 120 SAPLFIHGGA TTMLGFHHQI PGNSFGQDPD ENFMKKRYRE DTTAASTSPS SSSAKPERTG 180 VQGHEPDQES KPGSSNPSSY IPTPAMWAVG PAAGNVGNTF WMLPGTSSTM QRIGGFELPG 240 GGRFSPVQLG SMFLQQPQPV QQLGLGVTET NMGMLASMNA YNSSSSRGSG IDLGMNLEQH 300 HHHQNQPQGS DSGDENHKDS QS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077434.1 | 0.0 | transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 1e-66 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | G3BGV3 | 0.0 | G3BGV3_SOLLC; TCP transcription factor 13 | ||||
STRING | Solyc06g065190.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 6e-59 | TCP family protein |
Publications ? help Back to Top | |||
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