PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g022520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 372aa MW: 41383.6 Da PI: 4.6445 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.7e-18 | 102 | 151 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++a +++++g Sopen06g022520.1 102 QFRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDAEARRIRG 151 69*******.**********954...3************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 102 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-31 | 102 | 160 | No hit | No description |
SuperFamily | SSF54171 | 2.48E-21 | 102 | 161 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.354 | 102 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-36 | 102 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-10 | 103 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MCGGAIISDL VPPSRISRRL TADFLWGTSD LNNKKKNPSN YHSKPLSSKF IDLEDEFEAD 60 FQHFKDYSDD DEDVKAFGPK SVRSGDSNCD ADRSSKRKRK NQFRGIRQRP WGKWAAEIRD 120 PRKGIRVWLG TFNSAEEAAR AYDAEARRIR GKKAKVNFPD EAPVSVSRRA VKQNPQKALR 180 EETLNTVQPN MTYISNLDGG SDDSFSFFEE KPATKQYGFE NVSFIAGDMG LGSVSPSAGT 240 NVYFSSDEGS NTFDCSDFGW AEPCARTPEI SSVLSEVLET NETHFDEDAR PEKKLKSCSS 300 TSLTDDGNTV NTLSEELSAF ESQMKFLQIP YLEGNWDASV DAFLNTSAIQ DGGNAMDLWS 360 FDDVPSLMGG AY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 102 | 159 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-19 | 101 | 161 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY044235 | 0.0 | AY044235.1 Lycopersicon esculentum transcription factor JERF1 (JERF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079440.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | Q8LGR9 | 0.0 | Q8LGR9_SOLLC; JERF1 | ||||
STRING | Solyc06g063070.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-68 | related to AP2 12 |