PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g022110.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 330aa MW: 37620.2 Da PI: 5.7666

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g022110.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.3e-38	60	159	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ kae Sopen06g022110.1 60 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPFKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKAE 152 7******************************************************************************************** PP DUF260 94 lallkee 100 l+ + ++ Sopen06g022110.1 153 LDIVLHQ 159 *988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.066	59	160	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-36	60	155	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MTSFTTPNNN NNNNIHIQQT PHTFITDHNN LNHNNNKYTK RVHNINDKNV LLRVSGAGQA 60 CAACKYQRRK CAPDCVLAPY FPHDRQRQFL NAHKLFGVSN ITKIIRHLDQ PFKDEAMRTI 120 IFQSDVRAND PVGGCYRIIR DLQRHIDYCK AELDIVLHQL AYCRAQAVAA AAAVVSEQQQ 180 ILTDHHATEE SFNDNNCDGV VNQVDALVNN NNNASSYDQQ PMDQYNPHDS FYNHPRSDQQ 240 AEDDQQYNEI QDGQLDLTDI NFPWSLHEQE STSTSATNSM MKQLSVNDQC DNIKDPILEG 300 ISGFGSFEHD QTFDQHSYST REQTPIEGRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-26	56	154	7	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-26	56	154	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015079305.1	0.0	LOB domain-containing protein 22
TrEMBL	M1A1B2	0.0	M1A1B2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400012498	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-53	LOB domain-containing protein 22