PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g021620.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 520aa    MW: 58109.4 Da    PI: 7.3819
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g021620.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.4e-33190247260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Sopen06g021620.1 190 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 247
                       8****************************************.***************85 PP
2WRKY105.82.2e-33362420159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  Sopen06g021620.1 362 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASQDIRSVITTYEGKHNHD 420
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-29181248IPR003657WRKY domain
PROSITE profilePS5081124.088184248IPR003657WRKY domain
SuperFamilySSF1182909.29E-26185248IPR003657WRKY domain
SMARTSM007749.2E-37189247IPR003657WRKY domain
PfamPF031061.1E-25190246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-37347422IPR003657WRKY domain
SuperFamilySSF1182905.62E-29354422IPR003657WRKY domain
PROSITE profilePS5081138.629357422IPR003657WRKY domain
SMARTSM007743.0E-38362421IPR003657WRKY domain
PfamPF031061.1E-25363420IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MTTSFTDLLA SDDYPTKGLA DRIVERTGSG VPKFKTLPPP SLPLSPPPFS PSSYFAIPPG  60
LSPTELLDSP VLLSSSNLLP SPTTGSFPAH AFNWKSSSHQ DVKREDKNYS DFSFQPQVGT  120
AASSISKSQT NHVPLGQQAW NCQEPTKQND QNANGRSEFN TIQSFMQDNN DQNNGGNQYN  180
QSIREQKRSD DGYNWRKYGQ KQVKGSENPR SYYKCTYPNC PTKKKVERSL DGQITEIVYK  240
GNHNHPKPQS TRRSSSSTAS SAIQSYNTQT NEIPDHQSYG SNGQMDSVAT PENSSISFGD  300
DDHEHTSQKS SRSRGDDLDE EEPDSKRWKR ENESEGLSAL GGSRTVREPR VVVQTTSDID  360
ILDDGYRWRK YGQKVVKGNP NPRSYYKCTS TGCPVRKHVE RASQDIRSVI TTYEGKHNHD  420
VPAARGSGNH SINRPMAPTI RPTVTSHQSN YQVPLQSIRP QQSEMGAPFT LEMLQKPNNY  480
GFSGYSNSGD SYENQVQDNN VFSRTKDEPR DDMFMESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36181423878Probable WRKY transcription factor 4
2lex_A4e-36181423878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1928840.0AB192884.2 Solanum tuberosum PPS8 mRNA for double WRKY type transfactor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079509.10.0probable WRKY transcription factor 26
SwissprotQ6IEQ71e-140WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0V0I9T50.0A0A0V0I9T5_SOLCH; Putative double WRKY type transfactor-like
STRINGSolyc06g066370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-110WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]