PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g021080.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 538aa    MW: 59872.2 Da    PI: 8.5163
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g021080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.1e-16741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sopen06g021080.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                      ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-11545No hitNo description
CDDcd002022.96E-16654No hitNo description
Gene3DG3DSA:3.30.50.103.3E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003209.8E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139195.8E-10282366IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RPESDDLEDY  60
RVCRVKNMSL NYKEAKVLKQ KQNHDNTVVR TPPDYYQGFL KGLDEDTSNR SSSGSAISNT  120
ESSAQFGSTE ASDLTGPAQS NKWEARVPSR KRTCISRSKH SSVEKLTKDL CTILHEQQSS  180
YFSGSSEEDL LFESDKPMVS VEIGHGSVLI RHPNSIGREE ESEGSSLSVN NKRHYVNEAY  240
SRLSAPPVNI NRGVNLPNLG TEITKKPKSQ GMEQHQIKRD KDHLEKLHIL GHHTSPLCHI  300
DLKDVLNYEE FVTHFSSDEQ KQLLKYLAPV DSFAPPDSLK SMFNSSHFEE NLSSFQKLLA  360
EGVFDSSLPG VKLEDSRTLK RLILCYLTKS KWVEKYNLFK DTKCTSSTNG NEVTGRPNAI  420
GTGHSVNVKR PLEGHHPKYA GAKKAMKSPK RVVMKSSYEQ KDLVDNNSSC FSPKCLFPLP  480
SKSSPVLDSF HVANDQDVLL DVPSNSSFAQ AELLLPTSNF AAQASTSSSS VYPHLVRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079319.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-142GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A3Q7GXK10.0A0A3Q7GXK1_SOLLC; Uncharacterized protein
STRINGSolyc06g060940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-146GATA transcription factor 26