PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g020980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 298aa MW: 33813 Da PI: 7.8915 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.5e-19 | 128 | 182 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ +++++ +++ LAk+lgL rqV vWFqNrRa+ k Sopen06g020980.1 128 RKKLRLTKEQSAVLEDSFKDHHTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 182 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.8 | 9.5e-41 | 128 | 217 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+++LE+sF+ +++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l Sopen06g020980.1 128 RKKLRLTKEQSAVLEDSFKDHHTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCVENLTDENRRLQKEVQELR-SL 217 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.0E-29 | 2 | 101 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 1.0E-18 | 119 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 124 | 184 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-17 | 126 | 188 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-16 | 128 | 185 | No hit | No description |
Pfam | PF00046 | 2.0E-16 | 128 | 182 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 128 | 180 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-5 | 155 | 164 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 159 | 182 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-5 | 164 | 180 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00456 | 177 | 216 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.2E-4 | 181 | 217 | No hit | No description |
SMART | SM00340 | 2.3E-25 | 184 | 227 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.3E-10 | 184 | 218 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048467 | Biological Process | gynoecium development | ||||
GO:0080127 | Biological Process | fruit septum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MMMGKEDLGL SLSLNFPAEK TTTTINLISP PPSSSFNDNY WTTHPPFPHS SSDRNMETRS 60 FLKGIDVNRM PAMAAEEEEG GVSSPNSTIS SLSGNKRSER EGNCTEENEM ERASSRGISD 120 EEDGETCRKK LRLTKEQSAV LEDSFKDHHT LNPKQKLALA KRLGLRPRQV EVWFQNRRAR 180 TKLKQTEVDC EFLKRCVENL TDENRRLQKE VQELRSLKHS PQFYMQMTPP TTLTMCPSCE 240 RVATGPTNTP VNIPPHRVGP PHQHHQPMPL NMWDPSSTPI SQGHYGQVDT YPSLARQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 184 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00050 | PBM | Transfer from AT4G17460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077450.1 | 0.0 | homeobox-leucine zipper protein HAT4 | ||||
Swissprot | P46600 | 2e-96 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A3Q7GV47 | 0.0 | A0A3Q7GV47_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g060830.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 2e-95 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Publications ? help Back to Top | |||
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