PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g018290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26328.3 Da PI: 4.7257 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.4e-20 | 23 | 73 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq+++Le++F+++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k Sopen06g018290.1 23 RFSDEQVKVLESMFKQKTKLEPSKKLELARDLGLQPRQVAIWFQNRRARWK 73 69************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.7e-39 | 22 | 111 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eqvk+LE++F++++kLep++K elar+Lglqprqva+WFqnrRAR+ktkqlE++y++Lk+++d+l+ + e+L+ke+e+L ++l+e Sopen06g018290.1 22 KRFSDEQVKVLESMFKQKTKLEPSKKLELARDLGLQPRQVAIWFQNRRARWKTKQLEHEYRRLKDEFDNLAMKFESLKKEKESLLKQLQE 111 8**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.68E-19 | 13 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.2E-18 | 17 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-17 | 23 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-21 | 23 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.23E-16 | 23 | 76 | No hit | No description |
PRINTS | PR00031 | 3.7E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.5E-13 | 75 | 116 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEVAEDSSPV ECSKKKSHED GKRFSDEQVK VLESMFKQKT KLEPSKKLEL ARDLGLQPRQ 60 VAIWFQNRRA RWKTKQLEHE YRRLKDEFDN LAMKFESLKK EKESLLKQLQ ELSDQMENNH 120 AGCSRSQDSI DSEIYTSSEN IEAEVAVKNN IPVCINTSLD QDRIKGADSD REGTLFEHLR 180 WKEEEEFWNM EELGDSSLGS PEHWYAVGPG DSFDLSCENS KWWEF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 17 | KKKSH |
2 | 67 | 75 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079110.1 | 1e-165 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A3Q7GW49 | 1e-150 | A0A3Q7GW49_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g053220.2.1 | 1e-151 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-31 | homeobox 7 |