PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g016740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 171aa    MW: 19105.8 Da    PI: 5.5901
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g016740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.68.8e-4371061100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+CakdC+++pyfp ++ +kfa+vhk+FGasn++k+l+++p +er da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +
  Sopen06g016740.1   7 PCASCKLLRRRCAKDCIFSPYFPCDDLHKFAIVHKVFGASNISKMLQEVPVNERADAVSSLVYEANARMRDPVYGCVGAISYLQNQVMQLQMQ 99 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Sopen06g016740.1 100 LAMAQAE 106
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3416107IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGAGNSPCAS CKLLRRRCAK DCIFSPYFPC DDLHKFAIVH KVFGASNISK MLQEVPVNER  60
ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVMQLQMQL AMAQAEILCI QMQSETPQVA  120
AAAVLPITPD NQLVENDHDI DKSFFFSEQY LNFDSTSHKS CNSQDGLFLW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4421087112LOB family transfactor Ramosa2.1
5ly0_B3e-4421087112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078885.11e-127LOB domain-containing protein 12-like
SwissprotQ8LBW32e-69LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A3Q7GVM81e-121A0A3Q7GVM8_SOLLC; Uncharacterized protein
STRINGSolyc06g050950.2.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-59LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]