PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g016040.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 304aa    MW: 33777.8 Da    PI: 4.6304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g016040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-2083133155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr++  +g+WvAeIr+p+    r  r +lg+fgta eAa a+++a+++++g
  Sopen06g016040.1  83 CKYRGVRQRI-WGKWVAEIREPK----RgSRLWLGTFGTAIEAALAYDEAARAMYG 133
                       79*****998.**********83....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1483133IPR001471AP2/ERF domain
CDDcd000181.77E-3183142No hitNo description
PROSITE profilePS5103220.95684141IPR001471AP2/ERF domain
SMARTSM003802.8E-3684147IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2084141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-3084142IPR001471AP2/ERF domain
PRINTSPR003672.8E-98596IPR001471AP2/ERF domain
PRINTSPR003672.8E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAIMDEGANM VSLPLDYSGK RKSRSRRDRT KNVEETLAKW KEYNEKLDSV DNEGKGKPVR  60
KVAAKGSKKG CMRGKGGPEN WRCKYRGVRQ RIWGKWVAEI REPKRGSRLW LGTFGTAIEA  120
ALAYDEAARA MYGPCARLNL PNYASSKECD SVSWATTSAS DCTVASGFGE VCPADGALHE  180
ADTPLSSVKD ERTAMDIVEP TSIDEDTLKS GWDCLDKLNM DEMFDVDELL AMLESTPVFT  240
KDYNSDGKHN NMVSDSQCQE QNAVVDPMTA VDYGFDFLKP GRQEDLNFSS DDLAFIDLDS  300
ELVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1785141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078730.10.0dehydration-responsive element-binding protein 2A-like
TrEMBLQ8GZF20.0Q8GZF2_SOLLC; Dehydration responsive element binding protein
STRINGSolyc06g050520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-46ERF family protein