PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g015880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23729 Da PI: 8.1923 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.2 | 5e-42 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r d+++slvyeA++r+rdPvyG++g i++lqqq++ l+ae Sopen06g015880.1 44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADTANSLVYEANVRLRDPVYGCMGAISSLQQQVQALQAE 136 7******************************************************************************************** PP DUF260 94 lallkee 100 l+++++e Sopen06g015880.1 137 LNVIRAE 143 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.51 | 43 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-42 | 44 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSRERERYEE IGKKIKREAD DYSQMGRRYM LVPPGNTTLN TVTPCAACKL LRRRCAQECP 60 FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPESQRADT ANSLVYEANV RLRDPVYGCM 120 GAISSLQQQV QALQAELNVI RAEIIKYNTT TLIPSLLSSG AVSIATVLPP PQPPLTILPS 180 TISSTHDATM YTQPSTTTTE FSNISSENNI SYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 37 | 157 | 4 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 37 | 157 | 4 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078629.1 | 1e-159 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-86 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A3Q7GSR1 | 1e-139 | A0A3Q7GSR1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g050430.2.1 | 1e-140 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 7e-80 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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