PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g015560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 640aa    MW: 72948.7 Da    PI: 5.0789
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g015560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.4e-1047102155
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH.HHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv.WFqNrRake 55 
                       rrk  +++++q++eLe++++kn+ p++++r+e+A+kl+++ +q +  W+ N+ +k+
  Sopen06g015560.1  47 RRKNIRHNADQIKELEAFYKKNPIPNKKTRQEIATKLSMDFNQLQSeWYENKIMKQ 102
                       67888999************************************966***998875 PP
2START126.24.1e-401743825203
                       HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
             START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                       +a +el+++ + + p+W +      e++n +e+ + f +          +++e  ras +v +++  lv+ l+d++ qW  +++    k   +
  Sopen06g015560.1 174 DAFNELFRLYENGNPLWIRKLdgsgEMLNIEEYDRLFIP--LidtkpeyFTMEGTRASCIVADTSLALVNMLMDKN-QWVDMFPcivgKTYAT 263
                       677899999999999999999777766666666555543..04477899999************************.*********8888888 PP

                       EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
             START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                       +vis+g      + l l+++e+q +s lv+ R++ f+R+++++ +g+w+ivdvS+d+ ++         +++lpSg++++++++g ++vtw+e
  Sopen06g015560.1 264 DVISTGmagnknTSLLLIKTEFQIISDLVSvREVEFLRFSKKHAEGVWAIVDVSIDESKS---------CRRLPSGCILRDMPDGFCQVTWIE 347
                       99*****************************************************97655.........678********************* PP

                       -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
             START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                       h++++++l+h+ +r+l+k g+a+ga++w a lqrq
  Sopen06g015560.1 348 HTEYNENLVHEWYRPLIKAGMAFGAQRWIASLQRQ 382
                       *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-1126104IPR009057Homeodomain-like
SuperFamilySSF466894.02E-935101IPR009057Homeodomain-like
PROSITE profilePS5007110.12244105IPR001356Homeobox domain
SMARTSM003890.00146109IPR001356Homeobox domain
CDDcd000861.40E-747102No hitNo description
PfamPF000461.4E-747102IPR001356Homeobox domain
PROSITE profilePS5084830.092161388IPR002913START domain
CDDcd088753.20E-87167383No hitNo description
SuperFamilySSF559611.0E-22168382No hitNo description
SMARTSM002341.1E-27170385IPR002913START domain
PfamPF018529.1E-33175382IPR002913START domain
SuperFamilySSF559611.1E-6407634No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEGDSEKSDE SWLKYLIDGS VEEEVSTGDN ITGGASVHEQ GESSSRRRKN IRHNADQIKE  60
LEAFYKKNPI PNKKTRQEIA TKLSMDFNQL QSEWYENKIM KQENDKLRVE HSVTKEALEN  120
SIREKHSKEK VDENQTKIEH DQLEDEVKRL AYKLSLFNKV VAHDNIVLLN LGLDAFNELF  180
RLYENGNPLW IRKLDGSGEM LNIEEYDRLF IPLIDTKPEY FTMEGTRASC IVADTSLALV  240
NMLMDKNQWV DMFPCIVGKT YATDVISTGM AGNKNTSLLL IKTEFQIISD LVSVREVEFL  300
RFSKKHAEGV WAIVDVSIDE SKSCRRLPSG CILRDMPDGF CQVTWIEHTE YNENLVHEWY  360
RPLIKAGMAF GAQRWIASLQ RQHHFLKMMK SAVDPTVELS GERGIRKMAQ RMTDMFCTGV  420
CGTKHNWEII QPATNENPKL MMRTNVSDPS EYVGVILSAT KTIWLPTQQQ TLFKFFNNEQ  480
TRSQWDVLYN NSTMERMIQF PKGQNIDSNI SIYFAHGDES CASRVILQDT STDESGSILV  540
YATIGSQEMD KVIDGGDSSW VALFSNGIAI APDCNRNLFA ANDTSEEMDN GFEDGSMVTI  600
NFQMMGNMLP DTTLSMELVK QANGLISHTV HKIKSALKCW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773740.10.0homeobox-leucine zipper protein ROC5-like
TrEMBLA0A3Q7GSM60.0A0A3Q7GSM6_SOLLC; Uncharacterized protein
STRINGSolyc06g050160.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1581346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-151HD-ZIP family protein