PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g015190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 343aa    MW: 38037.4 Da    PI: 7.1406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g015190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.8e-28126185258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       +Dgy+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp v+e+tY+++H++
  Sopen06g015190.1 126 EDGYTWRKYGQKEILGSRFPRAYYRCTHQklyHCPAKKQVQRLDNDPYVFEVTYRSQHTC 185
                       7****************************9999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-27124186IPR003657WRKY domain
SuperFamilySSF1182907.85E-25124187IPR003657WRKY domain
SMARTSM007743.9E-35125187IPR003657WRKY domain
PROSITE profilePS5081120.599126183IPR003657WRKY domain
PfamPF031063.0E-25126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESNLANWAN QRDVLLSKTE EIISVFSNVK EKLIIHDVVQ EWLSNSGHQQ ALELYHATDH  60
TATATGFTVH GLPQGSDQMT ASHDSTRVAA ASSSQRQRTR CRTGDRDRRT LRVGAPRMGN  120
LELPPEDGYT WRKYGQKEIL GSRFPRAYYR CTHQKLYHCP AKKQVQRLDN DPYVFEVTYR  180
SQHTCYMSAT APTVPPPSVE EMTHQTTTTL PPAPLLLPPP TSASLSGHWL SMDIKPQGDQ  240
AGTSYTTTPF DIQRDFGHGT VGSLASLVTA GVGDVGPSGG RYGREIDYQP VVDMADAMFN  300
SGSSSNTSMD KIFSSIDDKW DTAERKNNSS YCGINILFMR NIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-17126185968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773917.10.0WRKY transcription factor 55
TrEMBLM1AGZ70.0M1AGZ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000226380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-41WRKY DNA-binding protein 55