PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g014200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 102aa MW: 11312.7 Da PI: 4.2704 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.5 | 1.2e-15 | 3 | 53 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ rq +sk + i KK +EL vLCd+++a++++s++g++ yss Sopen06g014200.1 3 KKIEDLVSRQQFYSKCKDSIVKKSNELGVLCDTNIALLMVSPNGEVTSYSS 53 6899*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.269 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-16 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-9 | 2 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-15 | 4 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-7 | 17 | 32 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-7 | 32 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MMKKIEDLVS RQQFYSKCKD SIVKKSNELG VLCDTNIALL MVSPNGEVTS YSSGESFEEI 60 MITAMNQPDE LNRRSTPNPD EEMASVNAED MAVAGTSRGW NT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 6e-88 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078431.1 | 2e-48 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A3Q7GTX2 | 6e-40 | A0A3Q7GTX2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g033820.1.1 | 1e-40 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 5e-14 | AGAMOUS-like 79 |