PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g014150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28608.3 Da PI: 7.5566 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++ +W+ ++ g+ Rt+k+c++rw +yl Sopen06g014150.1 19 KGAWSPQEDKKLIDYIAKYRIWNWSQMPKFAGLSRTGKSCRLRWINYL 66 79*****************999************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.7e-15 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE + +++ + lG++ W++Ia++++ gRt++++k++++++l Sopen06g014150.1 72 RGPFSLEETQTIIKMYQSLGNR-WSAIAKELP-GRTDNEIKNFYHTHL 117 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.65 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.18E-28 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-13 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.09E-9 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 21.25 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-14 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-10 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-25 | 74 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGEVVFQLQH GKNTGYVKKG AWSPQEDKKL IDYIAKYRIW NWSQMPKFAG LSRTGKSCRL 60 RWINYLRPDI KRGPFSLEET QTIIKMYQSL GNRWSAIAKE LPGRTDNEIK NFYHTHLKKH 120 VGTKVEVKPK SRKKAKQIEM STQKKPLITT NCPNIQSFDF TNSSSSSSYI IFDENYDFLE 180 TYNQENDVTS IVNQVDDENI VILESNPESI STSSVDLYIQ DFMDVSIDSS NVDFWLELYM 240 AADNLNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 19 | 123 | 7 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078427.1 | 0.0 | transcription factor MYB14-like | ||||
TrEMBL | K4C4L1 | 1e-180 | K4C4L1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g033870.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 4e-51 | myb domain protein 14 |