PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g011970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 594aa MW: 65534.8 Da PI: 6.5897 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 340.6 | 2.7e-104 | 226 | 593 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + ++e+A+a+ +g+++ a ++L+rl + a +g++ qRl ay++ AL++r+++ + p+ e +s+e++ + + ++e+sP++k+++ Sopen06g011970.1 226 QSIVEAATAIIDGKTNVAVQILTRLAQVADVRGSSEQRLMAYMVSALRSRVNS----TEYPPPVME---LHSKEHAVSAQNLYEISPCFKLGF 311 6789************************************************9....222233333...358899999999************ PP GRAS 96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak 184 ++aN aI+eav+ + +++H+iDfdi+qG+Q++ Ll+aLas++ + p slRiT++ + ++ ++l+++++ L+++A+++g+++ f+v ++ Sopen06g011970.1 312 MAANFAIVEAVADHpsNKIHVIDFDIGQGGQYLHLLHALASKKTDYPiSLRITAITTEFTVrADNSLKSIEDDLRSLANKIGISLIFKV-ISC 403 ************9999************************99977776*********87778999***********************9.699 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++dl+ e+L ++++EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv++veqe++ n++ F++r+ ea+ yy al+dsl+a+++r Sopen06g011970.1 404 TITDLSREKLGIEHDEALAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNEACGYYGALLDSLDATVSR 496 9******************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLv 368 e+ r+k+E+ l+r+++n vaceg++r er+e ++kWr+r+++aGF+p p+s+++a++ l+ + + g++v+e+sg + +gW++++L+ Sopen06g011970.1 497 EETGRVKIEEG-LSRKLTNSVACEGRDRLERCEVFGKWRARMSMAGFGPRPMSQQIADSLLKRLNSGPrgNPGFNVNEQSGGIRFGWMGKTLT 588 ***********.*******************************************999987777766557899******************** PP GRAS 369 svSaW 373 ++SaW Sopen06g011970.1 589 VASAW 593 ***** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.894 | 198 | 572 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-102 | 226 | 593 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MSSDFSGGFP DFHGGAGRSN LIPMNNSQPQ IQLDGASQNL RRRPTFIGKR SLAAFQQQQQ 60 FQFLQQQQQQ QGLGFYLRNV KPRNYQQASP ISPLDYSVSS SLISSEFSPM TPRHPLPIST 120 ANTNGVLSSG NPNCSAVASY LNQVQNSLYQ ESEEKMMNRL HELEKQLLED NNEEEEDTVS 180 VVTNNDEWSE TIKNLITPTS NHLSPASSTS SCSSSMESPP VSSPKQSIVE AATAIIDGKT 240 NVAVQILTRL AQVADVRGSS EQRLMAYMVS ALRSRVNSTE YPPPVMELHS KEHAVSAQNL 300 YEISPCFKLG FMAANFAIVE AVADHPSNKI HVIDFDIGQG GQYLHLLHAL ASKKTDYPIS 360 LRITAITTEF TVRADNSLKS IEDDLRSLAN KIGISLIFKV ISCTITDLSR EKLGIEHDEA 420 LAVNFAYRLY RLPDESVTTE NLRDELLRRV KGLSPKVVTL VEQELNGNTA AFVARVNEAC 480 GYYGALLDSL DATVSREETG RVKIEEGLSR KLTNSVACEG RDRLERCEVF GKWRARMSMA 540 GFGPRPMSQQ IADSLLKRLN SGPRGNPGFN VNEQSGGIRF GWMGKTLTVA SAWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-41 | 251 | 593 | 24 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077266.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A3Q7GUI2 | 0.0 | A0A3Q7GUI2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g036170.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-135 | SCARECROW-like 8 |