PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g011390.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 501aa MW: 56350.8 Da PI: 5.558 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 337.2 | 2.8e-103 | 181 | 498 | 46 | 365 |
GRAS 46 teALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg 138 e+L +r s++++y++l+++e + ++ ++++ +++e++P+lkf++++aN aI+ea +e+r+HiiDf+i qG+QW+ +lqaLa+Rp+g Sopen06g011390.2 181 QEGLVERKKLSGTTIYRSLKCKEPA---GKDLFSYMYILYEICPYLKFGYMAANGAIVEACRNEDRIHIIDFQIAQGTQWMIFLQALAARPGG 270 688888888899************9...99999999********************************************************* PP GRAS 139 ppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229 +p +RiTg+++p s+ + + l ++++rL+ + ee+++ + f+++ +++ ++L+v+pgEa aVn+ lqlh+++desv+ +++rd +++ Sopen06g011390.2 271 APYVRITGIDDPVSQyaRVDGLAAVARRLSAISEEFNIAVAFHAV-PVFALEITWDMLDVRPGEAQAVNFPLQLHHTPDESVDANNPRDGLIR 362 ************999999**************************5.66666788*************************************** PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 ++ksl Pk+v++veqe+ +n+++Fl rf+eal+yy a+f+s++++l r+ +eri+vE+++l+ +ivnv+aceg+er+erhe l+kW++r+++a Sopen06g011390.2 363 MIKSLCPKIVTLVEQESHTNTAPFLPRFVEALDYYHAMFESIDVTLQRDMKERITVEQHCLAMDIVNVIACEGKERVERHELLGKWKSRFMMA 455 ********************************************************************************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdr 365 GF+++pls+++++ +k l+++++ d y++ e++g+++ +W +r Sopen06g011390.2 456 GFQQYPLSSFVNSVIKDLMKRYS-DHYTLVEQDGAMLiCCWGGR 498 ***********************.66**9999999886899887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 51.387 | 100 | 487 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.9E-101 | 181 | 498 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MDSHHLVAYG VTGSDLSYSS YPTVSPLENR PFGTSKFDSG NSPLVNYFYS ETFNTVSDYQ 60 EQHSCTENLS GASSSSGSTL DCNQYFHRPS PSEDHLPEAP YSRNMKHTLL QLESALMGPD 120 EEAMKSSPYL GENMGAQTSG QRYKAWNKEA QVVHHQQSVV SILNGIQSDK RDNVMEDLPL 180 QEGLVERKKL SGTTIYRSLK CKEPAGKDLF SYMYILYEIC PYLKFGYMAA NGAIVEACRN 240 EDRIHIIDFQ IAQGTQWMIF LQALAARPGG APYVRITGID DPVSQYARVD GLAAVARRLS 300 AISEEFNIAV AFHAVPVFAL EITWDMLDVR PGEAQAVNFP LQLHHTPDES VDANNPRDGL 360 IRMIKSLCPK IVTLVEQESH TNTAPFLPRF VEALDYYHAM FESIDVTLQR DMKERITVEQ 420 HCLAMDIVNV IACEGKERVE RHELLGKWKS RFMMAGFQQY PLSSFVNSVI KDLMKRYSDH 480 YTLVEQDGAM LICCWGGRSG I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-49 | 216 | 498 | 83 | 366 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059336.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 1e-168 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | G8Z267 | 0.0 | G8Z267_SOLLC; Hop-interacting protein THI039 | ||||
STRING | Solyc12g005340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-140 | GRAS family protein |
Publications ? help Back to Top | |||
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