PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen06g011390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 472aa MW: 53012.8 Da PI: 5.5508 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 288.2 | 2.3e-88 | 206 | 469 | 103 | 365 |
GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +ea +e+r+HiiDf+i qG+QW+ +lqaLa+Rp+g+p +RiTg+++p s+ + + l ++++rL+ + ee+++ + f+++ +++ ++ Sopen06g011390.1 206 VEACRNEDRIHIIDFQIAQGTQWMIFLQALAARPGGAPYVRITGIDDPVSQyaRVDGLAAVARRLSAISEEFNIAVAFHAV-PVFALEITWDM 297 7999********************************************999999**************************5.66666788*** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 L+v+pgEa aVn+ lqlh+++desv+ +++rd +++++ksl Pk+v++veqe+ +n+++Fl rf+eal+yy a+f+s++++l r+ +eri+vE Sopen06g011390.1 298 LDVRPGEAQAVNFPLQLHHTPDESVDANNPRDGLIRMIKSLCPKIVTLVEQESHTNTAPFLPRFVEALDYYHAMFESIDVTLQRDMKERITVE 390 ********************************************************************************************* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdr 365 +++l+ +ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ +k l+++++ d y++ e++g+++ +W +r Sopen06g011390.1 391 QHCLAMDIVNVIACEGKERVERHELLGKWKSRFMMAGFQQYPLSSFVNSVIKDLMKRYS-DHYTLVEQDGAMLiCCWGGR 469 ***********************************************************.66**9999999886899887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.425 | 79 | 458 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.9E-86 | 206 | 469 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 472 aa Download sequence Send to blast |
MDSHHLVAYG VTGSDLSYSS YPTVSPLENR PFGTSKFDSG NSPLVNYFYS ETFNTVSDYQ 60 EQHSCTENLS GASSSSGSTL DCNQYFHRPS PSEDHLPEAP YSRNMKHTLL QLESALMGPD 120 EEAMKSSPYL GENMGAQTSG QRYKAWNKEA QVVHHQQSVV SILNGIQSDK RDNVMEDLPL 180 QEGLVERKKL SGTTIYRSLK CKEPAVEACR NEDRIHIIDF QIAQGTQWMI FLQALAARPG 240 GAPYVRITGI DDPVSQYARV DGLAAVARRL SAISEEFNIA VAFHAVPVFA LEITWDMLDV 300 RPGEAQAVNF PLQLHHTPDE SVDANNPRDG LIRMIKSLCP KIVTLVEQES HTNTAPFLPR 360 FVEALDYYHA MFESIDVTLQ RDMKERITVE QHCLAMDIVN VIACEGKERV ERHELLGKWK 420 SRFMMAGFQQ YPLSSFVNSV IKDLMKRYSD HYTLVEQDGA MLICCWGGRS GI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-41 | 199 | 469 | 95 | 366 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059336.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 1e-142 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | G8Z267 | 0.0 | G8Z267_SOLLC; Hop-interacting protein THI039 | ||||
STRING | Solyc12g005340.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-116 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|