PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g011330.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 742aa    MW: 82712.3 Da    PI: 10.537
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g011330.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien + rqvtfskRrng++KKA+ELSvLCda+va+iifs++g+l+ +ss
  Sopen06g011330.1  9 KRIENATSRQVTFSKRRNGVMKKAYELSVLCDAQVALIIFSHKGRLFQFSS 59
                      79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.09161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-31380IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002659.36E-42378No hitNo description
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-293859IPR002100Transcription factor, MADS-box
PfamPF142231.1E-32268406No hitNo description
SuperFamilySSF577565.44E-7428463IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.106.6E-5442462IPR001878Zinc finger, CCHC-type
PfamPF000981.5E-4446462IPR001878Zinc finger, CCHC-type
SMARTSM003430.0017446462IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.927447462IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MVRGKVEMKR IENATSRQVT FSKRRNGVMK KAYELSVLCD AQVALIIFSH KGRLFQFSSS  60
CMQKTIERYR EYTKETLINI NTFEVEQQME QDRLDNPRRS SKDKQVPKYV DYYVVPDPED  120
VSRPLKTLPP SRHQDHHISL FPSANPVQIS PFSINPDRKA CFRYAPVEWR SSRRYRVGNL  180
KQQPARRTAQ GANSRRPCAV RRAVPLAAAS RSLRSSRERP DQDGKFRIEK FDGTDFSWWK  240
MQIEDLLVQK DLDVVLGDKQ GKLSDAEWAV LDRKAMSVIR LSLTKNVAFN ILKEKTAKGI  300
LEALSNMYEK PSAANKIFLI RELVNTKMKE GSSVTEHINS LNSILARLLS VGIKFDDEVQ  360
ALLLLSSLPD SWSGTVTAVA SSVGPNGFTF EKIRDLVLGE DVRRRSSGES SGDMLNVVRG  420
RGNNRGSGSR NRRRSQSKAR DGSGVTCWNC KEVGHFRNQC QKDKQVNIAE DSVNEDLFIC  480
CAESNVDSWV MDSGASFHAT HSSEALQNLV IGDFGKVRLA DDRALDVTGM GDMVLKTPVG  540
FWTLKDVRVV PSLTKSLISV RQLDEQGHHV KFGNGQWKVV RGNLVMARGT KRGSLYIVGL  600
PSEGVTVPVQ KKNKVRFTES RGQKKVVFAR KKPRATGQIQ DERARKGSGR PVRGVCGSGS  660
TGRASAKAPR RQWVKRTSIP AVDTSPENFL LSMESVCSQG VLGSGSSCLK WEPVGTEDES  720
RAVSAVTDVL KLRGASTGLS VD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-20191193MEF2 CHIMERA
6byy_B9e-20191193MEF2 CHIMERA
6byy_C9e-20191193MEF2 CHIMERA
6byy_D9e-20191193MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A484NHL50.0A0A484NHL5_9ASTE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.48e-38AGAMOUS-like 42