PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g007580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 260aa MW: 29709.6 Da PI: 4.6909 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.5 | 8.3e-33 | 67 | 166 | 2 | 94 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 +g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s ++++ + s ++++s+ Sopen06g007580.1 67 PGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPefsqe 159 79***********************************************************99944444333455555555554444444333 PP TCP 89 .kaaksa 94 + +++ Sopen06g007580.1 160 nRGVPNS 166 2333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-31 | 68 | 162 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.013 | 69 | 127 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MNHQFQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSLCKKP EKWANFIAME 60 AELFEPPGRK DRHSKVSTAK GPKDRRVRLS PNTAIQFYDV QDRLGYDRPS KAIDWLIKEA 120 KAAIDALGEF PNNFHSTKLN PKKMQYSFDQ EQSPEFSQEN RGVPNSECGV QDKQQEVNYD 180 IPNLFSSSDG LKIPFLSDLQ SYPHGHFLNF QSLQDDTILS SGNHHQGSFF TTTSVNHFPS 240 VLSQIRCFLT GNPFSPVSSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 74 | 127 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 74 | 127 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069120.1 | 1e-156 | transcription factor TCP10-like | ||||
TrEMBL | G3BGU2 | 1e-151 | G3BGU2_SOLLC; TCP transcription factor 1 | ||||
STRING | Solyc02g077250.2.1 | 1e-151 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-31 | TCP family protein |