PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g003380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 345aa    MW: 38656.7 Da    PI: 10.0136
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g003380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31278336259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  Sopen06g003380.1 278 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDASMLIVTYEGEHNHP 336
                       69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.8E-18230275IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.1E-34266337IPR003657WRKY domain
PROSITE profilePS5081130.4272338IPR003657WRKY domain
SuperFamilySSF1182903.79E-27275337IPR003657WRKY domain
SMARTSM007743.7E-39277337IPR003657WRKY domain
PfamPF031062.5E-27279336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEEIEEVNKA AVENCHRVIS LLSSRTHDQN SYTNLVRETG EAVHKFKKVV TLLNSTLGHA  60
RVRKSSKFMT PLPHNILVEN PNCNIDDQAK ALRLLPIDTP ENRVLEMGAN VKCNLTLGSP  120
SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QQRRFLLQQQ QQLKQPTEMM YRRSNSGVSL  180
NFDSSTCTPT MSSTRSFISS LSVDGSVANG NSFHLIGASH SADQSSFQHK RKCSGRGDEG  240
SGKCGSSGRC HCSKKRKHRV KRSIKIPAVS NKLADIPSDE YSWRKYGQKP IKGSPHPRGY  300
YKCSSMRGCP ARKHVERCLE DASMLIVTYE GEHNHPRLPS QLANT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21265339275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078252.10.0probable WRKY transcription factor 21
RefseqXP_015078253.10.0probable WRKY transcription factor 21
SwissprotO043361e-114WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3Q7GRN20.0A0A3Q7GRN2_SOLLC; Uncharacterized protein
STRINGSolyc06g008610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-116WRKY DNA-binding protein 21