PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g034450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 650aa    MW: 74262.9 Da    PI: 5.2411
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g034450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.9e-23129229198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k lt+sd  ++  l++p k a ++       ++k++ ++l+ +d++g++W++k+ y+++++r+ lt+GW+ Fv +++L +gD vvF   ++
  Sopen05g034450.1 129 FCKCLTQSDIKSNWGLSVPLKDAVKCfppldkRQEKPC-QELIAKDLKGNEWRFKHAYQGQPRRHSLTNGWSTFVTSKKLLAGDLVVFL--RD 218
                       99****************************96444445.69************************************************..56 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       ++++l+v+++r
  Sopen05g034450.1 219 ETGKLHVGIRR 229
                       9999*****98 PP
2Auxin_resp29.33.7e-11254313159
        Auxin_resp   1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 
                       a+ha++tks F v+ +P   ++s+F+ +++k+ +  ++ + vGm  +m++e+eds + r 
  Sopen05g034450.1 254 ASHAFATKSLFFVYQKPCYnKSSQFIMSMSKYFEGGNHGIGVGMISRMQIESEDSCHVRR 313
                       689**************861678*******************************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-35122240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-28124232IPR015300DNA-binding pseudobarrel domain
CDDcd100179.27E-22128229No hitNo description
PfamPF023622.9E-20129229IPR003340B3 DNA binding domain
SMARTSM010193.4E-19129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196129231IPR003340B3 DNA binding domain
PfamPF065075.5E-8254312IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVDQLWFSQQ KYLNHMPFKG DDDLCREIWK ACSGSLLDVS KAGERVYYFP RLHVEQLEQS  60
SNQELIEKLQ LSNLPPKILC RVLHIRLLVE HETEEVYAET ILIPNQDQNE PTAADFSPLD  120
TPRPQFQSFC KCLTQSDIKS NWGLSVPLKD AVKCFPPLDK RQEKPCQELI AKDLKGNEWR  180
FKHAYQGQPR RHSLTNGWST FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQHCSIGAS  240
TFSRQSMEVV LAVASHAFAT KSLFFVYQKP CYNKSSQFIM SMSKYFEGGN HGIGVGMISR  300
MQIESEDSCH VRRTNDLDQI SLSQSQQTTN FMLEEDQYMQ DSEAVLDCAQ STMIDLEIRQ  360
QTIGSLNNIH CFAPVEDNGL QLHAAVAREN NEGSIPNDTV STQTRDEDLY ELFKDFDFPD  420
STNTSLDTIA LDLGSDWFRS TLQEQEETVT PSQPNASEDH SRRTSSVLEH PNSFQVMSIS  480
SNPSQIPYEG PGRGDEQVPW RGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE  540
ILAELVYFLD NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFSMESLLQ  600
RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNPPM RLHSVLEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-862231217307Auxin response factor 1
4ldw_A2e-862231217307Auxin response factor 1
4ldw_B2e-862231217307Auxin response factor 1
4ldy_A2e-862231217307Auxin response factor 1
4ldy_B2e-862231217307Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651290.0HM565129.1 Solanum lycopersicum auxin response factor 13-1 (ARF13-1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074461.10.0uncharacterized protein LOC107018481 isoform X1
TrEMBLA0A3Q7GN900.0A0A3Q7GN90_SOLLC; Auxin response factor
STRINGSolyc05g056040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1459378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.16e-98auxin response factor 11