PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g032650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 559aa    MW: 61743.4 Da    PI: 6.2004
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g032650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.58.3e-12319855910374
              GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                       + vs+ d ++ +al++ l++ +s +g+pmqRl ay++e+L+ar+++s+s++yk l+++e +    se +++++++++++P+++f++  aN  I
  Sopen05g032650.1 198 QKVSDADVTARDALMNVLEQKVSVSGEPMQRLSAYMLEGLKARIYSSGSNIYKMLKCKEPT---GSELISYMQVLYHICPYYRFAYTSANVVI 287
                       5688899999999***********************************************9...9**************************** PP

              GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                        ea+ +e+r+HiiDf+i qG QW+ L+q La Rp+gpps+ iTgv++++s   +   l+ +gerLak A+++gvpfef++ +a +  +++le+
  Sopen05g032650.1 288 EEAMRNESRIHIIDFQIAQGSQWVFLMQNLARRPGGPPSVHITGVDDSQSAhaRGGGLHLVGERLAKAAASCGVPFEFHA-AAISGCEVHLEN 379
                       ***********************************************9988889999***********************.7889999***** PP

              GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                       L++++gEalaVn+ + lh+++desv++ ++rd++L+lvkslsPk+v++veqe+++n++ Fl+rf e+l+yy+a+f+s++a+ p ++++ri+ E
  Sopen05g032650.1 380 LQMRHGEALAVNFPYVLHHMPDESVTTVNHRDRLLRLVKSLSPKIVTLVEQESNTNTSAFLTRFRETLDYYTAMFESIAAGRPGDDKQRINAE 472
                       ********************************************************************************************* PP

              GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +++++r+ivn++acega+r+erhe ++kW++rl++aGF+p pls ++ + ++ +l++++ + yr+ e++g+l+lgWk+r+L + SaWr
  Sopen05g032650.1 473 AHCVARDIVNIIACEGADRVERHEVFGKWSMRLTMAGFTPCPLSPSVGEAINGVLKEFSPN-YRLAESKGALYLGWKNRALATSSAWR 559
                       ***********************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.641144540IPR005202Transcription factor GRAS
PfamPF035142.9E-120198559IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MRASQIPQSS GGVHKLCHQP TTNFEQYYSP YHVVNNNSSD TSSSGTQLSY QTQNEKFFTL  60
DSLPDAGYVS YDSPPAVSVS SNWSPFSPQC SQSYISDQHH SSDNTYGSPL SGCSVINDGN  120
ELKHVLREMA NNLLGPGFDI DEDSSCSFNG EVSKPSKWNR VLEIAPSLDM KELLLACAEA  180
ISDVEVTARD AQMNVLEQKV SDADVTARDA LMNVLEQKVS VSGEPMQRLS AYMLEGLKAR  240
IYSSGSNIYK MLKCKEPTGS ELISYMQVLY HICPYYRFAY TSANVVIEEA MRNESRIHII  300
DFQIAQGSQW VFLMQNLARR PGGPPSVHIT GVDDSQSAHA RGGGLHLVGE RLAKAAASCG  360
VPFEFHAAAI SGCEVHLENL QMRHGEALAV NFPYVLHHMP DESVTTVNHR DRLLRLVKSL  420
SPKIVTLVEQ ESNTNTSAFL TRFRETLDYY TAMFESIAAG RPGDDKQRIN AEAHCVARDI  480
VNIIACEGAD RVERHEVFGK WSMRLTMAGF TPCPLSPSVG EAINGVLKEF SPNYRLAESK  540
GALYLGWKNR ALATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5219855828378Protein SCARECROW
5b3h_A4e-5219855827377Protein SCARECROW
5b3h_D4e-5219855827377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076935.10.0scarecrow-like protein 13
RefseqXP_027772982.10.0scarecrow-like protein 13
RefseqXP_027772983.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3Q7GMC00.0A0A3Q7GMC0_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000217480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13