PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g031890.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 240aa MW: 26955.2 Da PI: 9.5376

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g031890.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.2	3.5e-33	98	156	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+++C vkk+vers +d+++v++tYeg H+h+ Sopen05g031890.1 98 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTSSCGVKKRVERSIQDTSIVITTYEGVHTHP 156 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-33	83	158	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-29	90	158	IPR003657	WRKY domain
PROSITE profile	PS50811	30.538	93	158	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	98	157	IPR003657	WRKY domain
Pfam	PF03106	1.9E-26	99	156	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MIPSHQQQLQ LQPQPQHQRF ITCSSLPQSS SILLSDHLIN NVPVTPNLSS ISSSSTELAA 60 NDDHQHKYKK QLKPNKKKQK GEKEPRFAFM TKSEIDHLDD GFRWRKYGQK AVKNSPFPRS 120 YYRCTTSSCG VKKRVERSIQ DTSIVITTYE GVHTHPCPVT PRGWVGVQPV TTTYGGRVGG 180 GDGGGRCCHY GDYSSSLFST NNSLQEKRIW NSSNSSLAKD DHGLLQDMVS SRMRSDLIEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	88	159	7	78	Probable WRKY transcription factor 4
2lex_A	2e-27	88	159	7	78	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	180	GGRVGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075893.1	0.0	probable WRKY transcription factor 48
Swissprot	O22900	4e-48	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A3Q7GN72	1e-146	A0A3Q7GN72_SOLLC; Uncharacterized protein
STRING	Solyc05g053380.2.1	1e-141	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-45	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]