PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g031750.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SBP

Protein Properties

Length: 1003aa MW: 111187 Da PI: 7.9764

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g031750.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.3	2.8e-40	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls++k+yhrrhkvCevhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Sopen05g031750.1 149 VCQVQDCRADLSSVKDYHRRHKVCEVHSKAAKALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-32	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.983	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.27E-37	148	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.9E-29	150	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.27E-7	775	884	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.8E-7	777	896	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.77E-8	777	884	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MEARNFHGPV VSNMEVSGKK SREWDSNDWV WDGDRFTAEP LNSLPSDCRS KQLFPIGSEI 60 PETATGIFNG FSSGAGELSL GNDKGRKELE KRRRTIVIDD DDEQNGEAGS LNLKLGEQLY 120 PVMEGEVEKW EGKNGKKTKI SGVSSNRAVC QVQDCRADLS SVKDYHRRHK VCEVHSKAAK 180 ALVGNVMQRF CQQCSRFHVL EEFDEGKRSC RRRLAGHNKR RRKTHPENVA NGASVNDEGG 240 SNYLLISLLR ILANVQFNSS DQTKDQDLLS HLLRNLASLA GAANERNASG LFPAPSDLQN 300 PGTSMEAPKE DSLRPNANCL TIPASEVKEK RMDRGTSDAE RGISQNLCAL QPETLCCRKE 360 SLPINANASV TTSAPLKLNI DLNNIYDDSQ GGIQKLQNSD AFVNPGAASS GCPLWISHDP 420 HKSSSTRTSL NSGSTSSLSP SSSSGEAQSR TDRIVFKLFG KDPGEIPTGL RKQVLDWLSH 480 SPTDIESYIR PGCIILTLYL RMDKPIWEEL YSDLNSSLRK LLNASAGSFW RTGWVYSRVK 540 DRVAFLFNGQ VVLDTPLPSH RSCGISIIKP IAVCASERVQ FLVKGFNLSR PTTRFLCAME 600 GKYLVQGNCT DVMVGADSCM DYNEIQSLSF PCTVPNATGR GFIEIEDHGL SSNFFPFIVA 660 EKDVCSEIRT LESIIEAAKM DDGFLRGTEE FQARDQALDF LHELGWLLHR CHLKFRVGSG 720 ASLNLFPFQR FHRLIDFSID HDWCAVVKKL LDVFFNGVVD VGQQSSLDIP LQEVGILHRA 780 VRRKCRSMID VLLKYRHHGA FDKSGLQTQQ DDRGYLFRPD AVGPGGLTPL HVVASLAGYE 840 NILDALIDDP GQVGIEAWKS ARDSTGLTPN DYACLRGHYS YVHMVQKKIN QKPGDGHVVL 900 DIPGSLLDSN LKQKLSDGHR SVKVTSFQTE KSLGKPIHRQ CKQCKQKLSY GNSGTSLVYK 960 PAMLSMVAIA AICVCVALLF KSSPEVLYSF RPFRWELLKY GSI

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MEARNFHGPV VSNMEVSGKK SREWDSNDWV WDGDRFTAEP LNSLPSDCRS KQLFPIGSEI  60
PETATGIFNG FSSGAGELSL GNDKGRKELE KRRRTIVIDD DDEQNGEAGS LNLKLGEQLY  120
PVMEGEVEKW EGKNGKKTKI SGVSSNRAVC QVQDCRADLS SVKDYHRRHK VCEVHSKAAK  180
ALVGNVMQRF CQQCSRFHVL EEFDEGKRSC RRRLAGHNKR RRKTHPENVA NGASVNDEGG  240
SNYLLISLLR ILANVQFNSS DQTKDQDLLS HLLRNLASLA GAANERNASG LFPAPSDLQN  300
PGTSMEAPKE DSLRPNANCL TIPASEVKEK RMDRGTSDAE RGISQNLCAL QPETLCCRKE  360
SLPINANASV TTSAPLKLNI DLNNIYDDSQ GGIQKLQNSD AFVNPGAASS GCPLWISHDP  420
HKSSSTRTSL NSGSTSSLSP SSSSGEAQSR TDRIVFKLFG KDPGEIPTGL RKQVLDWLSH  480
SPTDIESYIR PGCIILTLYL RMDKPIWEEL YSDLNSSLRK LLNASAGSFW RTGWVYSRVK  540
DRVAFLFNGQ VVLDTPLPSH RSCGISIIKP IAVCASERVQ FLVKGFNLSR PTTRFLCAME  600
GKYLVQGNCT DVMVGADSCM DYNEIQSLSF PCTVPNATGR GFIEIEDHGL SSNFFPFIVA  660
EKDVCSEIRT LESIIEAAKM DDGFLRGTEE FQARDQALDF LHELGWLLHR CHLKFRVGSG  720
ASLNLFPFQR FHRLIDFSID HDWCAVVKKL LDVFFNGVVD VGQQSSLDIP LQEVGILHRA  780
VRRKCRSMID VLLKYRHHGA FDKSGLQTQQ DDRGYLFRPD AVGPGGLTPL HVVASLAGYE  840
NILDALIDDP GQVGIEAWKS ARDSTGLTPN DYACLRGHYS YVHMVQKKIN QKPGDGHVVL  900
DIPGSLLDSN LKQKLSDGHR SVKVTSFQTE KSLGKPIHRQ CKQCKQKLSY GNSGTSLVYK  960
PAMLSMVAIA AICVCVALLF KSSPEVLYSF RPFRWELLKY GSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	141	223	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	224	KRRRKTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015076164.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A3Q7GJX1	0.0	A0A3Q7GJX1_SOLLC; Uncharacterized protein
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12