PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g031660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 212aa    MW: 25293.7 Da    PI: 8.8639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g031660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd+ll+d+v+++G g+W+ +ar  g++R +k+c++rw +yl
  Sopen05g031660.1 13 KGPWTVEEDKLLIDYVNLHGEGRWNCVARLAGLKRNEKSCRLRWVNYL 60
                      79********************************************97 PP
2Myb_DNA-binding491.4e-1566110147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  T+ E+ +++++++ +G++ W+tIar ++ gRt++++k++w+++
  Sopen05g031660.1  66 RGQITPYEERIILELHAIWGNR-WSTIARNLP-GRTDNEIKNYWRTH 110
                       6788999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.836860IPR017930Myb domain
SuperFamilySSF466891.45E-2911107IPR009057Homeodomain-like
SMARTSM007171.0E-141262IPR001005SANT/Myb domain
PfamPF002491.6E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-231467IPR009057Homeodomain-like
CDDcd001677.00E-101560No hitNo description
PROSITE profilePS5129424.93161115IPR017930Myb domain
SMARTSM007175.3E-1465113IPR001005SANT/Myb domain
PfamPF002492.7E-1366110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2468116IPR009057Homeodomain-like
CDDcd001674.85E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRRWGIIEEE WRKGPWTVEE DKLLIDYVNL HGEGRWNCVA RLAGLKRNEK SCRLRWVNYL  60
RPDLKRGQIT PYEERIILEL HAIWGNRWST IARNLPGRTD NEIKNYWRTH FKKKVKKTSI  120
DNSEKIKICL LKRHQFQQQQ LSNNQIDVKK MVSLFEENEN KVVSHEQDQQ GGFFCSMING  180
YANYVQVPEA SSNEDITWDV GLWNLDDYNV NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075842.11e-157myb-related protein 305-like
SwissprotQ10MB43e-52MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3Q7GLT81e-140A0A3Q7GLT8_SOLLC; Uncharacterized protein
STRINGSolyc05g053150.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.18e-76myb domain protein 305
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]