PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g031600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 746aa MW: 84371.6 Da PI: 6.2352 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 382.4 | 5.2e-117 | 373 | 743 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+av+ g+++ a++lL++++e +sp gd mqRla+yf+ +L+ar+a+s++++ykal +++ s ++ l+a++l+ ++P+ ++ Sopen05g031600.1 373 LRTLLTLCAQAVAVGNQRTANELLKQIRESSSPMGDGMQRLAHYFADGLEARMAGSGTHIYKALITRPVS---AADILKAYHLLLAACPFRTM 462 5789***************************************************************999...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s + N++I++ +e++++vHiiD++i+ G+QWp L+q LasRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfefn+ +a+ Sopen05g031600.1 463 SSFFSNKTIMNLAEKASTVHIIDIGIMWGFQWPGLIQRLASRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAESFKVPFEFNA-IAQ 554 ***********************************************************9*****************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+++le+L++++gE+l+Vn+ ++ +llde+v ++s+rd +L+l+++l+P+v++ + +n++ F rf eal +ys+lfd+le+ +pr Sopen05g031600.1 555 KWETVKLEDLKINKGEVLVVNCLYRFRNLLDETVVVNSPRDVFLNLIRRLNPDVFIQGTVNGGYNAPFFISRFREALFHYSSLFDMLETIIPR 647 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e +er+ vE+ +lg+e++n++acegaer+er et+++W+ r+ +aGF+++pl+e+++ + ++++ + ++ +s++l++gWk+r v++ Sopen05g031600.1 648 EVHERMLVEKNILGQEAMNAIACEGAERIERPETYKQWQVRILKAGFRQLPLDEEIMRMTTERFKVYDKN-FIIDVDSEWLLQGWKGRIAVAL 739 **************************************************************99999955.********************** PP GRAS 371 SaWr 374 S W+ Sopen05g031600.1 740 STWK 743 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.725 | 347 | 724 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-114 | 373 | 743 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MGQYHEAGSA VKLEDEDCSF FAYPNLINNL RVNDYFHDDY DPNLINNLRV SDNFVNRNVD 60 ISPFQSDVER NTLVPSTADD FHEDYDFSDG VLKYINQMLM EEDIEEKTCM FQESAALQAA 120 ERSFYEVIGE KYPSSTNHEK SSTLGQIERY AMGHYSGNDG RDGLLCPNWI LDLGEDDVSL 180 VPDDVALDST SRSSNSLSGT VPDVPVDSPV STLRIPDIFS DGESVMQFKK GVEEASKFLP 240 TGNSLLASVR YHVVGKELRY KERKDAVVKV DKYGEKQYTE RSRGKKNTFH EDVVDLTEGR 300 NNKQSAVFSE STVRSEMFDR VLLCSAGKNE SALREALQAI SRQNASKNGP SKGSNGKKLQ 360 RKKKGGKRDV VDLRTLLTLC AQAVAVGNQR TANELLKQIR ESSSPMGDGM QRLAHYFADG 420 LEARMAGSGT HIYKALITRP VSAADILKAY HLLLAACPFR TMSSFFSNKT IMNLAEKAST 480 VHIIDIGIMW GFQWPGLIQR LASRPGGPPK LRITGIDFPN PGFRPAERVE ETGRRLANYA 540 ESFKVPFEFN AIAQKWETVK LEDLKINKGE VLVVNCLYRF RNLLDETVVV NSPRDVFLNL 600 IRRLNPDVFI QGTVNGGYNA PFFISRFREA LFHYSSLFDM LETIIPREVH ERMLVEKNIL 660 GQEAMNAIAC EGAERIERPE TYKQWQVRIL KAGFRQLPLD EEIMRMTTER FKVYDKNFII 720 DVDSEWLLQG WKGRIAVALS TWKAAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-53 | 380 | 742 | 26 | 378 | Protein SCARECROW |
5b3h_A | 6e-53 | 380 | 742 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-53 | 380 | 742 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075133.1 | 0.0 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A3Q7GJU1 | 0.0 | A0A3Q7GJU1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g053090.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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