PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g031360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 374aa    MW: 40654.9 Da    PI: 7.2483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g031360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-164792147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      + +W++eEd  l ++v+++G ++W+ Ia+ +  gR++k+c++rw + 
  Sopen05g031360.1 47 KEPWSPEEDAVLTELVNKFGARNWSMIAQGIA-GRSGKSCRLRWCNQ 92
                      679*****************************.***********985 PP
2Myb_DNA-binding574.5e-1899143147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Sopen05g031360.1  99 RKPFTDEEDHIIINAHAVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 143
                       789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.964293IPR017930Myb domain
SuperFamilySSF466896.83E-3144140IPR009057Homeodomain-like
SMARTSM007178.9E-144695IPR001005SANT/Myb domain
PfamPF002491.2E-144792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2649100IPR009057Homeodomain-like
CDDcd001671.11E-134991No hitNo description
PROSITE profilePS5129425.71594148IPR017930Myb domain
SMARTSM007177.8E-1698146IPR001005SANT/Myb domain
PfamPF002494.2E-1699143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-24101147IPR009057Homeodomain-like
CDDcd001674.62E-12101144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNEKAEQNGY AAAGDGHGGD GGCSLVDAGD AMMNGGRGSR VSSGRVKEPW SPEEDAVLTE  60
LVNKFGARNW SMIAQGIAGR SGKSCRLRWC NQLDPVLKRK PFTDEEDHII INAHAVHGNK  120
WAAIAKLLPG RTDNAIKNHW NSTLRRRFAG LWRVKPIRSM TLDDCSIYKA RALSEETMSC  180
EGVNQIKPLE MLEVSRTECI PSQSENKAQI YEMCCIPEET PHFTSERSRP TSMGNSDPPA  240
VHPTQKIGAF NVYNPSVTSR IVPMQGPLIH TFSPDFDICK LLEGVSGETI VPQGCGHGCC  300
AATSKSSSKS SLLGPEFVDY EEHPPLLSHE LASMATDLNN IAWIKSGLEK AGKLSSLATS  360
QRNSQRSSAQ VGFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-39461476107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075042.10.0transcription factor MYB25
TrEMBLA0A3Q7HG280.0A0A3Q7HG28_SOLLC; Uncharacterized protein
STRINGSolyc05g052850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.18e-90myb domain protein 109