PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g030960.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 417aa    MW: 46695.6 Da    PI: 4.4367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g030960.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-2081131155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++y+GVr++  +g+WvAeIr+p     +  +r +lg+f+ta eAa a+++a+++++g
  Sopen05g030960.1  81 CKYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAIEAALAYDEAARAMYG 131
                       79*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1481131IPR001471AP2/ERF domain
CDDcd000187.31E-3281140No hitNo description
Gene3DG3DSA:3.30.730.108.2E-3182140IPR001471AP2/ERF domain
SMARTSM003803.0E-3482145IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2182140IPR016177DNA-binding domain
PROSITE profilePS5103221.50982139IPR001471AP2/ERF domain
PRINTSPR003679.5E-108394IPR001471AP2/ERF domain
PRINTSPR003679.5E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAVLDQTSNM MLPMDYTRKK KSRSRKDAPK NVAQTLAKWK EVNEKLDACD DDGRKPVRKV  60
PAKGSKKGCM KGKGGPDNGR CKYRGVRQRT WGKWVAEIRE PHRGRRLWLG TFDTAIEAAL  120
AYDEAARAMY GPCARLNLPD YYASSKESSK DDSSLPTVSH SDSNTASSFS EVCPAGDMMR  180
RRANVPAIRH EDRLNEIEID GARTGSNEIG TPLSSLREEA KDEAKEVLDK SETFTPLSSL  240
REQAENEAKQ VLDKSETFEI KEEPAACSYD SRDIGQGDLG NLCLDDEMFD VNELLGMMDS  300
TPLDASAPSQ DVGFVPPKQE QYAYDPSYQL HSAAYGDNQL SNPAYQLDNA DDQFSNYQLD  360
NADDQFSNPY AGVDTLEGLQ QMEQQPTIEI DYDFDFLRPG RQEDFNFCLD DLGVLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1672142575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075127.10.0dehydration-responsive element-binding protein 2A-like
RefseqXP_027772764.10.0dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1J0M6870.0A0A1J0M687_SOLLC; Dehydration responsive element binding protein 2A-like protein
STRINGPGSC0003DMT4000697330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-34DRE-binding protein 2A