PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g030590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 318aa    MW: 35817.1 Da    PI: 8.9416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g030590.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17163213255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp+     +r++lg+f+ta +Aa a+++a+ +l+g
  Sopen05g030590.1 163 RYRGVRQRP-WGKFAAEIRDPTRK--GTRVWLGTFDTAMDAAVAYDRAAFRLRG 213
                       8********.**********8542..4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.82E-32162221No hitNo description
SMARTSM003808.3E-38163227IPR001471AP2/ERF domain
PfamPF008471.7E-11163213IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23163223IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-32163222IPR001471AP2/ERF domain
PROSITE profilePS5103223.999163221IPR001471AP2/ERF domain
PRINTSPR003671.6E-13164175IPR001471AP2/ERF domain
PRINTSPR003671.6E-13203223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDSSSLAMIR QHLLDDVVFM ENSSSSSSSL EKSSSTLYSQ TSSNSESLES LTSEIKLESN  60
FSFYPDFINT PQSSNLESVS RFSDNSTIEF QAKPQKKRSF NDRKPSLNIS IPSVKKTEEP  120
KTGEVKTGEP KTEEPKTGEV KTGEVKTEYS VKEKMVENSE KKRYRGVRQR PWGKFAAEIR  180
DPTRKGTRVW LGTFDTAMDA AVAYDRAAFR LRGSKAILNF PLEVSNFKQE NHEIEKNVVK  240
FNSNTNYCGK RVRGEMENDE GIVMKKEVKR EQMVATPLTP SNWSSIWDCG NGKGIFEVPP  300
LSPLSPHSNF GYSQLLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-32162224163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074952.10.0ethylene-responsive transcription factor 5-like
SwissprotQ404783e-84ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A3Q7GLA60.0A0A3Q7GLA6_SOLLC; Uncharacterized protein
STRINGSolyc05g052040.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-43ERF family protein