PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g030350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 389aa    MW: 44521.1 Da    PI: 5.6956
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g030350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.2e-251058250
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +ie+ +nrqvtfskRrngilKK +ELSvLCd++v +i+fs++g+l  ys
  Sopen05g030350.1 10 KIESLTNRQVTFSKRRNGILKKVYELSVLCDVDVGIIMFSPSGRLTHYS 58
                      59********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.604161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-25291IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-22323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGRSKLPLLK IESLTNRQVT FSKRRNGILK KVYELSVLCD VDVGIIMFSP SGRLTHYSRK  60
KRIEDILSEL ISLPDSERGF YINNKESVLW NLRKIEIEDK FCDIERINPA YVNANDTTKK  120
IQDEINGLHC KLDEAEGLLR IFEPDTQRIT SLHELDLCEK RLQVALNQVR QRMEQLSSND  180
TSSYEDNMAQ INELLQHIDN TQVHEKPPYD LWLELEDYNH ENNNINSPLY TASETSSISQ  240
SSMNLPSSTT YDTMSQTSLS GETYQNNNNF KQLQHSTRTL PNLTLQTSFK FAKPEMSQTS  300
IEGSFSCLTD ENLKKSICSN RVFPAITPLQ TSFSFAKAEM ETPTSALRPL APYLQAEATT  360
SSCTNQEGNN EMSWFQPKMK KSKQCHSID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376383PKMKKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754444e-98HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075852.20.0agamous-like MADS-box protein AGL104
TrEMBLA0A3Q7GJ020.0A0A3Q7GJ02_SOLLC; Uncharacterized protein
STRINGSolyc05g051830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.17e-47AGAMOUS-like 104