PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g028740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 333aa    MW: 37614 Da    PI: 5.8607
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g028740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-23129185258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +Dg +WrKYGqK + gs++pr YYrC+ + C ++k v+r ++ p ++eitY g+H +
  Sopen05g028740.1 129 EDGLSWRKYGQKLILGSKYPREYYRCARRCCGATKMVQRIETGPLTFEITYGGSHSC 185
                       7******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-23116187IPR003657WRKY domain
PROSITE profilePS5081119.015123184IPR003657WRKY domain
SuperFamilySSF1182902.48E-22126187IPR003657WRKY domain
SMARTSM007741.4E-27128187IPR003657WRKY domain
PfamPF031066.9E-22129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGENNCWERE VVITELTKGK ELMLQLQKHF DPMKQGVCQY LAAEILSSYD KAMSLLNGTA  60
LSGMMMSKGK EIIHSTPSSS TAPQLESPHL LADSSTKSCH RPSNYRKRKM LERRKEYVEA  120
RPGEEVPPED GLSWRKYGQK LILGSKYPRE YYRCARRCCG ATKMVQRIET GPLTFEITYG  180
GSHSCGQETK NQNEELLAVQ QTKCDEVERG AREIFESYIH KMVSTPNNSY NNSSTGDVFS  240
NSNSLFNIPN SDFIPTPTSS PHPDTDFLLD DNSLTLLFDH DVPENSGNDS LAALASEVYK  300
LYEENDKLNF PHRYDKQAEA ENSRPLNNVG DRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772871.10.0probable WRKY transcription factor 41
TrEMBLM1D7K80.0M1D7K8_SOLTU; Uncharacterized protein
STRINGSolyc05g050340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-27WRKY family protein