PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g028730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 23736.9 Da PI: 7.2662 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.2 | 2.1e-20 | 96 | 152 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dg nWrKYGqK + g+++ r Y++C + +C ++k v++ +++p +e tY g+H + Sopen05g028730.1 96 KDGLNWRKYGQKLILGAKYHREYFQCVYCHCDATKMVQQIETEPLSFEATYGGSHSC 152 7******************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 15.652 | 90 | 151 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.8E-20 | 91 | 154 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-20 | 94 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-20 | 95 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-19 | 96 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKQDVCRYLA AEILSSYDKA MSLLNGTALS GMMSKSKEII NPAPSSSTAP QLEFPQLLAD 60 SSTKSCDRPS KLRKRKTLAP RTEYVEARPG EEVSPKDGLN WRKYGQKLIL GAKYHREYFQ 120 CVYCHCDATK MVQQIETEPL SFEATYGGSH SCGQENKNQN EEVLVAVETQ VGRAAGQLYE 180 CYIPEMVLTQ NNSYKTKYPS DSTYEILQLF S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-162 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027772695.1 | 1e-158 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A3Q7GLM1 | 1e-127 | A0A3Q7GLM1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g050330.2.1 | 1e-149 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12061 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 8e-20 | WRKY family protein |