PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g028160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 319aa    MW: 35595.5 Da    PI: 6.1859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g028160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+lv+++k +G g+W++ ++  g+ R++k+c++rw +yl
  Sopen05g028160.1 14 KGPWTPEEDEKLVEYIKNHGHGSWRSLPHLAGLARCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding45.22.1e-1467112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Sopen05g028160.1  67 RGPFSHDEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.578965IPR017930Myb domain
SuperFamilySSF466892.58E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002498.0E-171461IPR001005SANT/Myb domain
CDDcd001671.80E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2465116IPR009057Homeodomain-like
SMARTSM007172.7E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.21466116IPR017930Myb domain
PfamPF002491.8E-1367112IPR001005SANT/Myb domain
CDDcd001671.24E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEKLVEYIK NHGHGSWRSL PHLAGLARCG KSCRLRWTNY  60
LRPDIKRGPF SHDEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG  120
VDPQTHEPSS APNGQMITPP TSLAARHMAQ WESARLEAEA RLSRESQPLV PSSVGRSGTD  180
YFLRIWNSEV GESFRKLDKK EGRTTCESPA SQASSSTKFG STSGVTTEMD VSFAAYQNED  240
TEWKNSQPYT EDVLQGYDDT SSSSGLEDSS ESALQLLLDF PSNNDMSFLG HSDTYSLYPE  300
FLSESSFKCS SAEHEVGFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075100.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3Q7GMQ50.0A0A3Q7GMQ5_SOLLC; Uncharacterized protein
STRINGSolyc05g048830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-119myb domain protein 17