PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g028040.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 1118aa MW: 125305 Da PI: 9.2188

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g028040.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.4	8.9e-42	40	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ae Sopen05g028040.1 40 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRVDAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAE 132 7****************************************************************************************** PP DUF260 94 lallkee 100 a++++e Sopen05g028040.1 133 FAKAQAE 139 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.379	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-41	40	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF13976	1.6E-10	163	234	IPR025724	GAG-pre-integrase domain
Gene3D	G3DSA:3.30.420.10	7.6E-35	244	404	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	3.29E-46	245	407	IPR012337	Ribonuclease H-like domain
PROSITE profile	PS50994	26.958	245	411	IPR001584	Integrase, catalytic core
Pfam	PF00665	1.8E-24	247	362	IPR001584	Integrase, catalytic core
SuperFamily	SSF56672	1.33E-35	632	853	No hit	No description
Pfam	PF07727	4.9E-100	632	874	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	1.33E-35	880	1060	No hit	No description
CDD	cd09272	3.99E-69	956	1093	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence Send to blast
MNSSSSTFAS TISTTPTSGL LSPKSSILLS TPPMNIVLSP CAACKILRRR CVEKCVLAPY 60 FPPTDPLKFT IAHRVFGASN IIKMLQELPE EQRVDAVNSM VYEANARIRD PVYGCAGAIC 120 QLQKQISELQ AEFAKAQAEI LNLKCQNSNL LALVCMEGPC EHGLYVLPGT SSSAHPVSES 180 VPVAPVALSA DGHSLLWHSR LGHPSTQIIN SLMSQLGFSS IHVNNCDSCS IAKSHKLPFT 240 LSEKRTTAPF QLIHSDLWGP TAVPSFAGFR YYICFVDDFT KYTWLYPLKH KSQAYTTFVT 300 FEKMVKTQFN SHVKLFRSDN GKEYVNNIFG QFLQSLGIIH QTSCPYTPEQ NGVAERKHRH 360 LIETVVTLLH QSHLPVSFWV EALATANYLI NRMPSHTLSN KSPYQLLYQE LPNYTNLRVF 420 GCLAYPWLRP HITHKLQPRS RPCIFLGYHP TSKGYRCLDP QTHKVYISRH VKFVENEFPY 480 ESISSSTNTS FIGVLPLFPT YSQGPSPPSP TPPPTTQPPL ITPSTVTHNT PATTTHTHNQ 540 PEPPHTHNIS SPIRFGSFPA TPESPPPVPP PNTHPMLTRG KAGIFKPKTF QATILPNTPL 600 PDSEPTTYSV ASKNAYWRHA MDDEFKALTD QKTWVLVPKP HGRHPVGCKW VYKIKHNADG 660 SISRYKARLV AKGYNQEYGL DYSETFSPVI RQETIRLVLS LAVRNNWLIN QLDVSNAFLH 720 GMLDETIYMT QPPGYVDPRF PQHVCKLQKS LYGLKQAPRA WYTRLKTFLQ GLGFTCCVHD 780 TSLFTRHSAH GTVILLVYVD DIIITGSTAA LIQDVTRAMH TTFKMKDLGP LHYFLGMEVS 840 RTGSGLFLHQ SKYARDLLQK AGLEKCTSQP TPMAVSSSTN GADTPFADIT HFRSLIGALQ 900 YLAITRPDIQ FAVNRVAQRM HQPSEHDYHC LKRILRYIFG TLGRGLLIRP GDLELRGFSD 960 SDWANDKNDR KSTSGFLVFL GPNLISWCTK KQPKVSRSST EAEYRALALL AAETMWVTYI 1020 LRELRATHTV PALYCDNKST ICVAKNSVLH TRMKHVDTDC LFVRDEVQAG TMTVQYVPTE 1080 EQPADILTKP LPSRQHDYLS SKLPFASAQL SLRGDNNR

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence Send to blast

MNSSSSTFAS TISTTPTSGL LSPKSSILLS TPPMNIVLSP CAACKILRRR CVEKCVLAPY  60
FPPTDPLKFT IAHRVFGASN IIKMLQELPE EQRVDAVNSM VYEANARIRD PVYGCAGAIC  120
QLQKQISELQ AEFAKAQAEI LNLKCQNSNL LALVCMEGPC EHGLYVLPGT SSSAHPVSES  180
VPVAPVALSA DGHSLLWHSR LGHPSTQIIN SLMSQLGFSS IHVNNCDSCS IAKSHKLPFT  240
LSEKRTTAPF QLIHSDLWGP TAVPSFAGFR YYICFVDDFT KYTWLYPLKH KSQAYTTFVT  300
FEKMVKTQFN SHVKLFRSDN GKEYVNNIFG QFLQSLGIIH QTSCPYTPEQ NGVAERKHRH  360
LIETVVTLLH QSHLPVSFWV EALATANYLI NRMPSHTLSN KSPYQLLYQE LPNYTNLRVF  420
GCLAYPWLRP HITHKLQPRS RPCIFLGYHP TSKGYRCLDP QTHKVYISRH VKFVENEFPY  480
ESISSSTNTS FIGVLPLFPT YSQGPSPPSP TPPPTTQPPL ITPSTVTHNT PATTTHTHNQ  540
PEPPHTHNIS SPIRFGSFPA TPESPPPVPP PNTHPMLTRG KAGIFKPKTF QATILPNTPL  600
PDSEPTTYSV ASKNAYWRHA MDDEFKALTD QKTWVLVPKP HGRHPVGCKW VYKIKHNADG  660
SISRYKARLV AKGYNQEYGL DYSETFSPVI RQETIRLVLS LAVRNNWLIN QLDVSNAFLH  720
GMLDETIYMT QPPGYVDPRF PQHVCKLQKS LYGLKQAPRA WYTRLKTFLQ GLGFTCCVHD  780
TSLFTRHSAH GTVILLVYVD DIIITGSTAA LIQDVTRAMH TTFKMKDLGP LHYFLGMEVS  840
RTGSGLFLHQ SKYARDLLQK AGLEKCTSQP TPMAVSSSTN GADTPFADIT HFRSLIGALQ  900
YLAITRPDIQ FAVNRVAQRM HQPSEHDYHC LKRILRYIFG TLGRGLLIRP GDLELRGFSD  960
SDWANDKNDR KSTSGFLVFL GPNLISWCTK KQPKVSRSST EAEYRALALL AAETMWVTYI  1020
LRELRATHTV PALYCDNKST ICVAKNSVLH TRMKHVDTDC LFVRDEVQAG TMTVQYVPTE  1080
EQPADILTKP LPSRQHDYLS SKLPFASAQL SLRGDNNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	39	145	10	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	39	145	10	116	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-63	LOB domain-containing protein 1