PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g027080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 233aa MW: 26332.9 Da PI: 8.4632 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.7 | 2.8e-29 | 13 | 71 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK +kgs+fpr+YY+C+++ +C++kk++e+s++d++++ + Y+geHnh+ Sopen05g027080.1 13 NDKWAWRKYGQKYIKGSPFPRNYYKCSTSkHCEAKKQIEKSSKDENIFLVSYSGEHNHD 71 8*************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-28 | 5 | 73 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.687 | 7 | 73 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-24 | 9 | 73 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-30 | 12 | 72 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-23 | 13 | 71 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MLTYESSQEE LTNDKWAWRK YGQKYIKGSP FPRNYYKCST SKHCEAKKQI EKSSKDENIF 60 LVSYSGEHNH DPPMSRRYLA SCNNNSNLKL PKGINISPKE SIFSASSSSS KRVKHSTDVA 120 SPIIGTKPPL EIGSKNKMVV AVVHNIGDGD EKDHSMNRSI LCDLPPFMTS LASHKNDSSV 180 EERWSPSLNL LLPAVTYCRT SVPEAKKEEQ EQEVLLRLEI LIAMVPLHHT EQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-19 | 1 | 73 | 3 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075935.1 | 1e-108 | probable WRKY transcription factor 27 | ||||
TrEMBL | K4C0S1 | 2e-98 | K4C0S1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g045880.1.1 | 3e-99 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 2e-29 | WRKY DNA-binding protein 27 |