PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g027080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 233aa    MW: 26332.9 Da    PI: 8.4632
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g027080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-291371259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                      +D+++WrKYGqK +kgs+fpr+YY+C+++ +C++kk++e+s++d++++ + Y+geHnh+
  Sopen05g027080.1 13 NDKWAWRKYGQKYIKGSPFPRNYYKCSTSkHCEAKKQIEKSSKDENIFLVSYSGEHNHD 71
                      8*************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28573IPR003657WRKY domain
PROSITE profilePS5081130.687773IPR003657WRKY domain
SuperFamilySSF1182901.14E-24973IPR003657WRKY domain
SMARTSM007745.7E-301272IPR003657WRKY domain
PfamPF031062.1E-231371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLTYESSQEE LTNDKWAWRK YGQKYIKGSP FPRNYYKCST SKHCEAKKQI EKSSKDENIF  60
LVSYSGEHNH DPPMSRRYLA SCNNNSNLKL PKGINISPKE SIFSASSSSS KRVKHSTDVA  120
SPIIGTKPPL EIGSKNKMVV AVVHNIGDGD EKDHSMNRSI LCDLPPFMTS LASHKNDSSV  180
EERWSPSLNL LLPAVTYCRT SVPEAKKEEQ EQEVLLRLEI LIAMVPLHHT EQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-19173374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075935.11e-108probable WRKY transcription factor 27
TrEMBLK4C0S12e-98K4C0S1_SOLLC; Uncharacterized protein
STRINGSolyc05g045880.1.13e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-29WRKY DNA-binding protein 27