PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g027030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 366aa    MW: 41321.7 Da    PI: 9.235
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g027030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.2e-27155213259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D+++WrKYGqK +kgs+fpr+YY+C+++ +C++kk++e+s++d++++ +  +geHnh+
  Sopen05g027030.1 155 NDKWAWRKYGQKYIKGSPFPRNYYKCSTSkHCEAKKQIEKSSKDENIFLVSCSGEHNHD 213
                       8*************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26146215IPR003657WRKY domain
PROSITE profilePS5081129.425149215IPR003657WRKY domain
SuperFamilySSF1182903.01E-23150215IPR003657WRKY domain
SMARTSM007748.0E-27154214IPR003657WRKY domain
PfamPF031069.6E-22155213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MYLLFKYAYP KDSEYGKFTI HYSIETTSGI ITYALGQAIT FRVGGVNQPV RDIVDEYVRE  60
KAEAYGDAVL TDIFIQIHYD QNLSSVEMNI SNDQIARLIA ESVIEKVHMP YVVGFVVVKP  120
GSAPSKEQTP LTQSQTRKNH SIMLTYESSQ EELTNDKWAW RKYGQKYIKG SPFPRNYYKC  180
STSKHCEAKK QIEKSSKDEN IFLVSCSGEH NHDPPMSRRY LASCNNNSKF KLPKGINISP  240
KESTFNASSS SSKRVKHSTD VASPIIRTKP PLEIGSKNKM VVAVVHNIGD GEEKVDMNED  300
IFMEPKDKKE ATKPSSTSQQ NSISSNRKLK VFSEEFITRF NFSASTSHLD RFPISSSTTL  360
VLSPHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-171522151274WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.17e-29WRKY DNA-binding protein 27