PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g026760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 155aa MW: 17604.1 Da PI: 5.9856 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 112.5 | 2.2e-35 | 33 | 132 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l++fw ++ +e++++fk n lP rik i+k+d dv+mi++e+Pvll+kacelfi eltl sw +ae+n rrtlkk d+ +++ +td d Sopen05g026760.1 33 LEMFWRDKkreMENVNNFKnNLLLPPNRIKTIMKMDTDVRMIATETPVLLAKACELFIQELTLLSWFKAEKNCRRTLKKDDLINVIIQTDSLD 125 899**987778********45578********************************************************************* PP NF-YC 91 flvdivp 97 fl+d+ + Sopen05g026760.1 126 FLLDDDI 132 ***9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-25 | 50 | 118 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.89E-22 | 51 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.1E-16 | 56 | 116 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MENNFEKSTV KAGQSDAHST LSQPKLEKKQ EALEMFWRDK KREMENVNNF KNNLLLPPNR 60 IKTIMKMDTD VRMIATETPV LLAKACELFI QELTLLSWFK AEKNCRRTLK KDDLINVIIQ 120 TDSLDFLLDD DINATDGSTL SGVSFYAAGG SNGRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-25 | 42 | 129 | 5 | 91 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027772685.1 | 1e-111 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 4e-33 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | M1B8B7 | 3e-66 | M1B8B7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039471 | 4e-67 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 4e-28 | nuclear factor Y, subunit C4 |