PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g011450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 312aa MW: 34273.9 Da PI: 8.1144 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.1 | 8.1e-41 | 20 | 96 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adlse++eyhrrhkvCevhsk+++v+++g+ qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ Sopen05g011450.1 20 CLVDGCNADLSECREYHRRHKVCEVHSKTAKVTIAGRDQRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 96 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.4E-32 | 14 | 81 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.701 | 17 | 94 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-38 | 18 | 99 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-30 | 20 | 93 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MESSSSSSKR AKAPGNIAHC LVDGCNADLS ECREYHRRHK VCEVHSKTAK VTIAGRDQRF 60 CQQCSRFHSL VEFDDGKRSC RKRLDGHNRR RRKPQPDSMA KNSGILFGQQ GTKLLSFSSQ 120 QIFPSAVVSS AWAGVVKTDS DMVLYNNQSH MNGMDSQNSF PDSSGHSYKG GSQFQFMQGS 180 DRSLTEAPLF EHPTSAAGIS SSGQKIFSSG LNDIVDSDRA LSLLSSAPAV TREIGLSHMV 240 QQPASIPRSQ SHGLQYDGLS HFPFAQDFNS KPQDSHVSNS SSPLHFHDML QNAQDESSTV 300 PASQQTLAFM WD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 20 | 93 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 93 | KRSCRKRLDGHNRRRRKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074805.1 | 0.0 | teosinte glume architecture 1-like | ||||
Refseq | XP_015074806.1 | 0.0 | teosinte glume architecture 1-like | ||||
Refseq | XP_027772616.1 | 0.0 | teosinte glume architecture 1-like | ||||
Refseq | XP_027772617.1 | 0.0 | teosinte glume architecture 1-like | ||||
Refseq | XP_027772619.1 | 0.0 | teosinte glume architecture 1-like | ||||
TrEMBL | A0A3Q7HAE1 | 0.0 | A0A3Q7HAE1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g015840.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4920 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-49 | SBP family protein |