PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g010900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 463aa MW: 50448.9 Da PI: 8.7182 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.7 | 8.9e-40 | 177 | 253 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+akey+r+h+vC+ hsk+p+v+v+g+ +rfCqqCsrfh++sefD++krsCrrrL++hn+rrrk+++ Sopen05g010900.1 177 CQVEGCNLDLSSAKEYYRKHRVCDSHSKSPKVIVAGVARRFCQQCSRFHSVSEFDDKKRSCRRRLSDHNARRRKPHQ 253 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-32 | 170 | 238 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.53 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-37 | 175 | 256 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-31 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGTGGYGSDV 60 KCGSSIKSSI SASTDSSPKE GFKVSNFAFE TFNASPEDPS KKLESSKAEV SRNSPPMEAS 120 VGSVEPVIGL KIGKRTCETF GGGSSAKVSS FPPNPTSSAA ATKKAKSSTQ NAPIPHCQVE 180 GCNLDLSSAK EYYRKHRVCD SHSKSPKVIV AGVARRFCQQ CSRFHSVSEF DDKKRSCRRR 240 LSDHNARRRK PHQETIQFNS ARLSSLFYDS RQPMNLVLNE AQLIHSRAAA NATWESTQDS 300 KFSITREFTP KPERTGSTNG KSLLERNQFS RAVGAHSNAS SLLLPSKGTT AEVFNRGAKE 360 SMFNMVTGPE FPRALSLLST NSWGSSEPES VSLNHANQTS MPEQMMQAIP PHMSSQYWQA 420 GQHSSDPRYH TLAAANSNSG GSFQEMGVFK APFDTDFYLN ALN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-25 | 177 | 250 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 232 | 249 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015076845.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015076847.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015076848.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015076849.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A3Q7GGA1 | 0.0 | A0A3Q7GGA1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g015510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-64 | squamosa promoter binding protein-like 2 |