PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g010600.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 137aa    MW: 15394.7 Da    PI: 9.9571
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g010600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.72.2e-1715991598
             NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                      + ++ ++P++r+kki+k d+d++++ +ea  l++ + elf+  l+ +s   a e+kr+t+k   +  av+r + + dfl+d  p 
  Sopen05g010600.1 15 ETHQLQIPISRVKKIMKLDQDINKVNSEALYLIASSTELFLELLAEKSAQVALEKKRKTIKLDHLRVAVKRHKpTSDFLLDSLPM 99
                      5567899*********************************9999*************************9976489*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.14E-2015100IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.8E-211684IPR009072Histone-fold
PfamPF008083.7E-192083IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPGEDEEGTS TVAGETHQLQ IPISRVKKIM KLDQDINKVN SEALYLIASS TELFLELLAE  60
KSAQVALEKK RKTIKLDHLR VAVKRHKPTS DFLLDSLPMP SQPLDRSPKV QSRPRSSTDN  120
PLPSGTRRIE AFFQKCT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075692.13e-96chromatin accessibility complex protein 1
TrEMBLA0A3Q7GII14e-94A0A3Q7GII1_SOLLC; Uncharacterized protein
STRINGSolyc05g015330.1.17e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-48nuclear factor Y, subunit C13