PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g009020.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 282aa    MW: 31902.5 Da    PI: 10.0697
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g009020.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.7e-27122180259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs+fpr+YY+C+++ +C++kk++e+s +d++++++  +g Hnh+
  Sopen05g009020.1 122 NDIWTWRKYGQKHIKGSPFPRNYYKCSTSkHCEAKKQIEKSPKDENIFVVSCSGGHNHD 180
                       8*************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-26115182IPR003657WRKY domain
PROSITE profilePS5081127.944116182IPR003657WRKY domain
SuperFamilySSF1182908.24E-23117182IPR003657WRKY domain
SMARTSM007742.3E-26121181IPR003657WRKY domain
PfamPF031061.7E-21122180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTSFNGLSEI VSLDFPIARQ ERSYDQVIIT NQNNNEQLYL HTIQSVQFIQ QTVVPQSRTM  60
VACVPPITTP QKCIDLQQQP DMLANIHPNL TFSMKTPLTQ SRTRKKQSIR LTYESLQEEL  120
TNDIWTWRKY GQKHIKGSPF PRNYYKCSTS KHCEAKKQIE KSPKDENIFV VSCSGGHNHD  180
PPMNRRYLAS CNNDSKFKIS KGINSLPKAS ILNASSSSSM RVKHSRVVTS PIIATKPPLE  240
IGSKSKIVVA VVQNKGDDKV KVNMTEDIFM GIDQLQRSTT ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-161191821274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773000.10.0probable WRKY transcription factor 14
TrEMBLK4BYC41e-160K4BYC4_SOLLC; Uncharacterized protein
STRINGSolyc05g014040.1.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-29WRKY DNA-binding protein 27