PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g009000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 386aa    MW: 43751.7 Da    PI: 9.9877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g009000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY40.36.3e-137452259
                      EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                      r+YY+C+++ +C++kk++e+s +d++++++  +g Hnh+
  Sopen05g009000.1  7 RNYYKCSTSqHCEAKKQIEKSPKDENIFVVSCSGGHNHD 45
                      99****9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.744147IPR003657WRKY domain
SuperFamilySSF1182908.76E-10647IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-11647IPR003657WRKY domain
PfamPF031061.9E-9645IPR003657WRKY domain
SMARTSM007742.8E-5646IPR003657WRKY domain
PROSITE profilePS5096610.113258290IPR007527Zinc finger, SWIM-type
PfamPF044345.4E-7263289IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-7265292IPR006564Zinc finger, PMZ-type
PROSITE profilePS501588.993366379IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGLIPKRNYY KCSTSQHCEA KKQIEKSPKD ENIFVVSCSG GHNHDPPMNR RYLASCSNDS  60
KFKIPKGINS LPKASILNAS SSSSMRVKHS RVVTSPIIAT KSPLEIGSKN KMVVTVVQNK  120
GDDKVKAYRK KDFEKLMAKV EKVDGRVKKY LEEAGYERWS RSHATVNRGR MMTSNIAECI  180
NGCLVNAQKL HVLDFLEEAR ILFGSWNCKN REIASYTKET LGRKFEEILI INASKCSKMK  240
VVASSKFIFS VYEGGIRYIV CLERKNCSCG RFQHDEIPCA HAMVVLKKKN IKDVHPYCSD  300
YYKPDALANT YAVPMEPMPD KSDWIVPESV LEEVVLPPRY KKMPGKPRKK RKKNADEKLS  360
GNTNCCGRCG QEGHNRRTCT FFPKDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348352KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075295.10.0uncharacterized protein LOC107019264
TrEMBLQ60D521e-174Q60D52_SOLDE; Zinc finger containing preotein, putative
STRINGSolyc12g019720.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-10WRKY DNA-binding protein 27