PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g008450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 401aa MW: 44174.7 Da PI: 8.037 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Sopen05g008450.1 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99 69*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-29 | 50 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-10 | 50 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.089 | 50 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.96E-30 | 50 | 106 | No hit | No description |
PRINTS | PR00367 | 2.3E-9 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MEDAMRRLNQ ESDLPLQNTT NSSTLNKTRS SCSSNKRSLK DTTTGPSAVR YRGVRRRPWG 60 RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFVYPP CPTPTQPTST 120 NDALFNIHSS YNSLKLTSPY YHQSSNTLKD LSNRPFFHSS SPYGSTGRGH VIGQKSNDSL 180 NMLLFRELLG SNSSNNNNTN NLNVTSSMNM PNLYEQLPNF TMNRNTNSFC SYLPNSSNTV 240 IPSSSVMTTQ VPKFDNTVHC TINNNSSSSA TANDDSAAGM DFFPSESSDS GLLEEALNGF 300 FPKPKPIKSV PSSLPNYSTK GEFCNIFSQQ LQPPQQQQQE QSNNGGLNSD FGLLSSSSSL 360 SSFPVDYFPG NLQVSPGDNI MGDIFQYPDL LSIFAAKLQN A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 50 | 106 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239483.2 | 0.0 | ethylene-responsive transcription factor ESR1-like | ||||
TrEMBL | A0A3Q7H8Y9 | 0.0 | A0A3Q7H8Y9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g013540.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 3e-13 | ERF family protein |